VascoElbrecht JAMP issues

VascoElbrecht / JAMP

JAMP - Just Another Metabarcoding Pipeline

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issues

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Error in swarm

#27 michelledesontje closed 2 years ago
0
20% of reads get discarded in PE merging with Vsearch

#26 VascoElbrecht opened 2 years ago
2
add option to consider wobbles in map2ref data

#25 VascoElbrecht opened 3 years ago
0
New versoin will not get fetched by regular install

#24 DominikBuchner closed 3 years ago
1
Plotting in Cutadapt function breaks the code even if LDist is set to False

#23 DominikBuchner opened 3 years ago
1
JAMP won't work with up to date cutadapt

#22 DominikBuchner closed 3 years ago
3
installation

#21 Kmicaduarte opened 4 years ago
1
Update DESCRIPTION

#20 OndroV closed 4 years ago
2
Update BOLD_web_hack.R

#19 OndroV opened 4 years ago
0
cluster ESV results!

#18 VascoElbrecht opened 4 years ago
0
clustering does not work on 1000+ files due to cat issue

#17 VascoElbrecht opened 5 years ago
0
empty files are not copied when trimming fasta files

#16 VascoElbrecht opened 5 years ago
0
bold web hack alternative

#15 karl-cottenie opened 5 years ago
0
add options to responde by email, once script is done running

#14 VascoElbrecht opened 6 years ago
0
Demultiplexing - imput file names

#13 VascoElbrecht closed 5 years ago
1
U_cluster_otus() crashes if only one file is present

#12 VascoElbrecht opened 6 years ago
0
Add FastQC analysis

#11 VascoElbrecht closed 5 years ago
2
Add SRA sequence download function!

#10 VascoElbrecht closed 5 years ago
1
Update README.md

#9 TristanLefebure closed 6 years ago
1
Bold_web_hack: Make %tage filtering on below order level

#8 VascoElbrecht closed 5 years ago
3
intrigate LULU filtering after clustering

#7 VascoElbrecht closed 5 years ago
1
sequence count's don't deal with dereplicated data

#6 VascoElbrecht closed 5 years ago
1
Subsampling only works, if the file contains enough reads

#5 VascoElbrecht opened 7 years ago
0
include rarefaction function!

#4 VascoElbrecht closed 5 years ago
1
make empty folder to drop demultiplexed files in

#3 VascoElbrecht closed 5 years ago
1
demultiplex into same folder

#2 VascoElbrecht closed 5 years ago
1
haplotyping issue with OTU subsetting

#1 VascoElbrecht closed 5 years ago
1