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Wytamma
/
snk
Snakemake workflow management system and CLI generation tool
https://snk.wytamma.com
MIT License
31
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2
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JOSS review: Clarify intended users for `snk.yaml` in documentation
#90
huddlej
opened
3 days ago
0
JOSS review: Consider including graphviz as dependency for installation documentation
#89
huddlej
opened
3 days ago
0
JOSS review: Prompt at uninstall incorrectly suggests default behavior is to confirm
#88
huddlej
opened
3 days ago
0
JOSS review: Fix minor paper typos
#87
huddlej
opened
3 days ago
0
➖ remove write-the
#86
Wytamma
closed
4 days ago
0
JOSS review: Rust-related errors when installing test environment via hatch
#85
huddlej
closed
4 days ago
2
JOSS review: Fix contributing typos
#84
huddlej
closed
4 days ago
1
JOSS review: Should @ktmeaton be included in the author list?
#83
huddlej
closed
4 days ago
3
list executor special options
#82
cmeesters
opened
1 week ago
1
differentiate between 'profile' and 'workflow-profile'
#81
cmeesters
opened
1 week ago
0
snk does not work with the tag command
#80
cmeesters
closed
1 week ago
3
Short version hashes
#79
Wytamma
opened
2 weeks ago
0
Add snk run
#78
Wytamma
opened
3 weeks ago
0
If commit is not found workflow is still installed
#77
Wytamma
closed
1 month ago
0
Make the distinction of the snk and snk-cli more clear
#76
Wytamma
closed
1 month ago
0
OSError: [Errno 39] Directory not empty: 'envs'
#75
Wytamma
closed
4 weeks ago
2
Gitpython - Snk-cli conflicts while writing pyproject
#74
Andyargueasae
closed
5 months ago
1
Remove git from snk-cli
#73
Wytamma
closed
1 month ago
0
FileNotFoundError: Could not find SNK config file in workflow directory:
#72
Wytamma
closed
5 months ago
0
Print snake help fails on v8
#71
Wytamma
closed
6 months ago
0
Dependancies
#70
Wytamma
closed
6 months ago
0
Dependancy injection for isolated venvs
#69
Wytamma
closed
6 months ago
0
Support Snakemake v8
#68
Wytamma
closed
6 months ago
0
Snk cli refactor
#67
Wytamma
closed
7 months ago
0
If `version` is in the snk file then commit hash should also be printed
#66
Wytamma
closed
6 months ago
1
Cluster flag for snk
#65
Kobie-Kirven
closed
8 months ago
2
None should be editable on editable install
#64
Wytamma
closed
7 months ago
0
scripts folder in working dir is interpreted as scripts folder...
#63
Wytamma
closed
8 months ago
1
Order of workflow options changes
#62
Wytamma
closed
9 months ago
0
:truck: rename pipeline to workflow
#61
Wytamma
closed
9 months ago
0
update snk list
#60
Wytamma
closed
9 months ago
0
Monkey patched parse_config is not used in submission to the HPC
#59
Wytamma
closed
9 months ago
1
(singularity) conda info --json' returned non-zero exit status
#58
ktmeaton
closed
9 months ago
1
Snakemake versioning leads to pulp dependency issue
#57
ConnorChato
closed
9 months ago
1
🐛 cli arg doesn't overwrite config if arg is default
#56
Wytamma
closed
9 months ago
2
snk-cli
#55
Wytamma
closed
7 months ago
1
snk.yaml CLI control
#54
Wytamma
closed
6 months ago
1
Snakemake version 8
#53
Wytamma
closed
6 months ago
2
Profile
#52
Wytamma
closed
9 months ago
0
add eject command
#51
Wytamma
closed
9 months ago
2
Install pipeline from commit SHA
#50
ktmeaton
closed
10 months ago
2
Base envs
#49
Wytamma
closed
4 months ago
2
rerun-triggers?
#48
Wytamma
closed
9 months ago
0
lists are filtered out by script show
#47
Wytamma
closed
9 months ago
0
Script command
#46
Wytamma
closed
1 year ago
0
Make conda usage optional
#45
pbousquets
closed
12 months ago
1
ModuleNotFoundError: No module named 'rich'
#44
Wytamma
closed
12 months ago
0
filter output of --dag
#43
Wytamma
closed
12 months ago
1
Arbitrary snakemake parameters do not work
#42
mmcguffi
closed
1 year ago
2
Change working directory
#41
Wytamma
closed
1 year ago
1
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