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YuLab-SMU
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ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
https://yulab-smu.top/treedata-book/
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To better support the visualization of pvclust class using ggtree
#527
xiangpin
closed
2 years ago
0
update fortify for pvclust and hclust class-like
#526
xiangpin
closed
2 years ago
0
update fortify for pvclust
#525
xiangpin
closed
2 years ago
2
branch.length
#524
SolayMane
closed
1 year ago
5
fix a bug of roundrect layout to support coord_flip and label of geom_tiplab was mapped to other variable in mapping contains when as_ylab is TRUE
#523
xiangpin
closed
2 years ago
0
as_ylab in geom_tiplab suppresses custom tip labels
#522
cwhittaker1000
closed
2 years ago
1
Error in `vec_as_location()`:
#521
Tsingsjeen
opened
2 years ago
1
fix bug for geom_hilight when layout is daylight or graph layout function
#520
xiangpin
closed
2 years ago
0
Error install ggtree R4.1.3
#519
Kirito-Ma
closed
1 year ago
2
Error install ggtree R 4.2.1
#518
bullones
closed
1 year ago
2
adjust the height of hclust-like class with dendrogram layout
#517
xiangpin
closed
2 years ago
3
clone the plot environment before assigning layout
#516
xiangpin
closed
2 years ago
0
Limit BEAST 95% HPD node date estimates for geom_range plotting of error
#515
ksw9
closed
2 years ago
3
fix bug of layoutEqualAngle
#514
xiangpin
closed
2 years ago
0
angle not equal in equal-angle layout
#513
li-yq
closed
2 years ago
1
warning_wrap export
#512
andrewrech
closed
2 years ago
2
Installation fails on master with missing, undefined object
#511
andrewrech
closed
2 years ago
4
how to use ggtree to draw fan-shaped tree with geological time scale
#510
CretaceousBird
opened
2 years ago
4
gheatmap colnames in italics
#509
Espinosa-Gongora
opened
2 years ago
2
geom_tiplab better compatible with dendrogram layout
#508
xiangpin
closed
2 years ago
0
treedata book site is down
#507
flashton2003
opened
2 years ago
0
Add outline to nodepies
#506
LPDagallier
closed
2 years ago
1
gheatmap: colour columns individually from binary data
#505
clarkevansteenderen
opened
2 years ago
0
ggtree collapse all but
#504
antoine4ucsd
opened
2 years ago
0
`future_lapply` leads to Error in UseMethod("MRCA") : no applicable method for 'MRCA' applied to an object of class "treedata"
#503
aguang
closed
2 years ago
1
Label right tree in multiple cophylo/tanglegrams with ggtree
#502
dandaman
closed
2 years ago
4
安装ggtree咋还需要yulab.utils?
#501
wangshun1121
closed
2 years ago
2
rename tip label by a mapping table for multiphylo tree
#500
neptuneyt
closed
2 years ago
1
Angle of tip label wrong after using rotate with a fan tree
#499
Ekie22
opened
2 years ago
0
remove redundant loop in slanted.v2
#498
xiangpin
closed
2 years ago
0
slanted layout when branch.length is none
#497
xiangpin
closed
2 years ago
0
Slanted layout v2
#496
brunomioto
closed
2 years ago
3
Problems with ggtree and treeio
#495
cabraham03
closed
2 years ago
1
How to automatically highlight different branch using different categories in tree?
#494
hall-wang
opened
2 years ago
0
add geom_striplab
#493
xiangpin
closed
2 years ago
0
introducing to.bottom in geom_hilight
#492
xiangpin
closed
2 years ago
1
match
#491
majonavarrete
closed
2 years ago
0
tibble format: branch.length & label
#490
nick-youngblut
opened
2 years ago
0
Document update
#489
SanL20
closed
2 years ago
0
reroot tree problem
#488
liuqian666
closed
2 years ago
5
geom_tiplab2 for rectangular trees
#487
TseWue
closed
2 years ago
2
Error: ! Can't subset `.data` outside of a data mask context.
#486
KyleTDavid
closed
2 years ago
2
update citation
#485
xiangpin
closed
2 years ago
4
ggtree collapsed clade+images
#484
grenaud
opened
2 years ago
1
Problems with geom_tiplab() and parser when formatting labels contain numbers
#483
agg437
closed
2 years ago
2
`phylopic_uid`: Error in download_url(path) : Failed to download
#482
bschilder
closed
2 years ago
1
`ggtree::read.tree` crashes RStudio
#481
bschilder
opened
2 years ago
7
how to keep branch length and resolved root, simultaneously?
#480
felixlee0608
opened
2 years ago
0
how to keep branch length and r esolved root, simultaneously?
#479
felixlee0608
closed
2 years ago
0
facet_widths() are not compatiable with plotly. Request to make annotated phylogenies interactive.
#478
magnusnosnes
opened
2 years ago
0
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