Zymo-Research figaro issues

Zymo-Research / figaro

An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

GNU General Public License v3.0

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issues

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WIsh list for Figaro2

#67 hjarnek opened 1 month ago
0
NovaSeq quality profiles - Any issues with Figaro?

#66 andrebolerbarros opened 2 months ago
0
Unknown error

#65 carordc opened 2 months ago
0
Installation error, ImportError: cannot import name '__version__' from 'figaro' (unknown location)

#64 maringa780 opened 2 months ago
0
Multiple improvements and bugfixes.

#63 jmgs7 closed 3 months ago
2
Debug

#62 alienzj opened 6 months ago
0
Module error

#61 alienzj closed 6 months ago
3
ImportError during Figaro running

#60 luigallucci opened 8 months ago
3
there does not seem to be a file called `bdist_wheel` anywhere

#59 antonkratz opened 10 months ago
0
Installed successfully but command line doesn't work

#58 WJH58 closed 1 year ago
0
Create a new release

#57 bernt-matthias opened 1 year ago
1
Error installing FIGARO

#56 jibarozzo opened 1 year ago
0
Value error setting an array with a sequence Fastq - 16s

#55 jayramr opened 1 year ago
0
Update on using Figaro with variable read lengths

#54 sreejata-b closed 1 year ago
1
ValueError occuring when inputing v3-v4 .fastq files

#53 elishafreedman opened 1 year ago
0
when to apply trimming parameters

#52 smzt opened 1 year ago
1
Possible Migration

#51 michael-weinstein opened 2 years ago
2
AttributeError: module 'collections' has no attribute 'Iterable'`

#50 msubirana closed 1 year ago
2
Unable to validate fastq files enough to perform this operation

#49 ekgough opened 2 years ago
2
Could not infer read orientation from filename

#48 ekgough opened 2 years ago
10
naming standards

#47 nick-youngblut opened 2 years ago
0
Plots for expected error values

#46 liuyu724 opened 2 years ago
0
Figaro Version

#45 dot4822 opened 2 years ago
0
branch: variableLengthReads

#44 cschu opened 2 years ago
0
primer lengths submitted on cli can now be 0 (in accordance with env …

#43 cschu opened 3 years ago
0
Oriented sequence

#42 wyanren opened 3 years ago
2
sequence includes barcodes

#41 Xinming9606 closed 3 years ago
1
Output results recommendation for DADA2

#40 mentorwan opened 3 years ago
3
question about figaro outputs

#39 mlin2017 closed 3 years ago
0
Forward reads appear to not be of consistent length

#38 BirongZhang opened 3 years ago
6
Errors unsing figaro with v3-v4 sequencing file MiSeq

#37 vehamel opened 3 years ago
15
Running figaro fails on 16S V4 data

#36 dean0358 opened 3 years ago
10
Issue running figaro with 16S V4 data

#35 pig-raffles opened 3 years ago
5
highest score is negative

#34 adamsorbie opened 3 years ago
4
read-specific maxExpectedError and trim length

#33 akhst7 closed 3 years ago
6
Only one sample is running

#32 aureliendejode opened 3 years ago
2
ImportError trying to run figaro

#31 elpape closed 3 years ago
1
Forward read files appear to be of different lengths or of varied lengths.

#30 weibokong27 closed 3 years ago
1
Fix dictionaries

#29 jonasklopp closed 3 years ago
0
Question about the scoring method of FIGARO

#28 5uperb0y closed 3 years ago
2
missing nameless outputs

#27 handibles closed 3 years ago
2
change match "Rx.fastq" to "Rx_001.fastq"

#26 handibles closed 3 years ago
3
Incorrectly added lines and enchancement idea

#25 przemekiljan closed 3 years ago
3
Amends/make runnable 122020

#24 cschu closed 3 years ago
3
non overlapping reads

#23 nomascus closed 3 years ago
2
Figaro stops at some point

#22 termithorbor closed 3 years ago
3
FASTQ naming scheme

#21 zhonglinma closed 3 years ago
3
Figaro crashing

#20 jarrodscott closed 3 years ago
5
kerikssonNamingStandard

#19 michael-weinstein closed 4 years ago
1
Before or after cutadapt?

#18 Aircus closed 4 years ago
2