issues
search
a-r-j
/
graphein
Protein Graph Library
https://graphein.ai/
MIT License
994
stars
125
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
[pre-commit.ci] pre-commit autoupdate
#347
pre-commit-ci[bot]
closed
9 months ago
1
Fix url for PDB sequence metadata download in `PDBManager`
#346
a-r-j
closed
9 months ago
1
`ProteinGraphDataset` fails if a single graph construction fails.
#345
kamurani
opened
9 months ago
0
[Docs] API Reference for `graphein.ml` is broken
#344
kamurani
opened
9 months ago
0
can't read pdb ends with .pdb1.gz
#343
pengzhangzhi
closed
9 months ago
3
`graphein.protein.edges.distance.add_distance_threshold` should allow computing distance by "any to any" atomistic even with "residue" granularity set
#342
kamurani
opened
9 months ago
0
[pre-commit.ci] pre-commit autoupdate
#341
pre-commit-ci[bot]
closed
9 months ago
1
Change how foldcomp datasets are downloaded to specific location
#339
a-r-j
closed
10 months ago
1
Running colab exmaple got an error ModuleNotFoundError: No module named 'torch_geometric'
#338
pengzhangzhi
closed
3 months ago
2
Remove Hydrogen isotopes in deprotonating
#337
Ruibin-Liu
closed
8 months ago
7
Fix `add_sequence_neighbour_vector`
#336
anton-bushuiev
closed
8 months ago
3
Fix nx -> pyg conversion with no edges
#334
anton-bushuiev
closed
10 months ago
2
Add the ability for the `PDBManager` to perform interface-based chain filtering
#333
amorehead
opened
10 months ago
1
Fix handing id when loading from path
#332
chaitjo
closed
10 months ago
4
Error during `Getting requirements to build wheel`
#331
valentynbez
closed
10 months ago
3
Fix `.requirements` reference for extras in setup.py
#330
AH-Merii
closed
11 months ago
2
Release v1.7.1
#329
AH-Merii
closed
10 months ago
2
Update pyyaml version breaking installation
#328
AH-Merii
closed
11 months ago
5
Fix incorrect link to collab notebook in readme
#327
AH-Merii
closed
11 months ago
2
Fix incorrect link in README.md
#326
AH-Merii
closed
11 months ago
1
[pre-commit.ci] pre-commit autoupdate
#325
pre-commit-ci[bot]
closed
11 months ago
2
RFAM family <-> PDB structure ID mapping
#324
rvinas
opened
1 year ago
5
Add cpdb support to speed up parsing
#323
a-r-j
opened
1 year ago
5
Add new helper functions to `PDBManager`
#322
amorehead
closed
1 year ago
3
Bugfixes to angle computation and pNeRF
#321
a-r-j
closed
1 year ago
1
Fixes padding in pNerF computations
#320
a-r-j
closed
1 year ago
1
Store temp x attr in FoldComp examples to ensure correct batching.
#319
a-r-j
closed
1 year ago
1
Fix `Protein` initialisation #317
#318
a-r-j
closed
1 year ago
1
FoldCompDataset calls graphein.protein.tensor.Protein with incorrect __init__ arguments
#317
mawright
closed
1 year ago
2
Accounts for selenocysteine in sidechain torsion angle computation
#316
a-r-j
closed
1 year ago
2
Minor fix to ensure virtual angles are returned in correct shape
#315
a-r-j
closed
1 year ago
2
PDB structure culstering
#314
pengzhangzhi
opened
1 year ago
4
Improve data loading performance for FoldComp Datasets by 10x
#313
a-r-j
closed
1 year ago
2
Fix jaxtyping syntax error
#312
a-r-j
closed
1 year ago
2
`PDBManager` - Bug fixes, adding necessary changes to export only first PDB model, and merging-in latest updates from `master`
#311
a-r-j
closed
1 year ago
3
Minor fixes
#310
a-r-j
closed
1 year ago
3
`PDBManager` - Bug fixes, adding necessary changes to export only first PDB model, and merging-in latest updates from `master`
#309
amorehead
closed
1 year ago
5
Add NLW to modified residues
#308
a-r-j
closed
1 year ago
2
Tensor fixes
#307
a-r-j
closed
1 year ago
3
A small bug in the `creating_datasets_from_the_pdb.ipynb`
#306
pengzhangzhi
closed
1 year ago
1
Fix and enhance geometric node features
#305
anton-bushuiev
closed
11 months ago
5
On `rgroup_df=compute_rgroup_dataframe(remove_insertions(raw_pdb_df))`
#304
anton-bushuiev
closed
11 months ago
2
issue in protein graph
#303
etheng-jiao
closed
11 months ago
3
remove rogue print statement
#302
a-r-j
closed
1 year ago
1
Consistent conversion to undirected graphs
#301
anton-bushuiev
closed
1 year ago
4
Add autopublish workflow
#298
a-r-j
closed
1 year ago
1
Add missing import #296
#297
a-r-j
closed
1 year ago
1
NameError for missing `os` import in `graphein.protein.graphs`
#296
kamurani
closed
1 year ago
2
Pandas 2.0.0
#295
a-r-j
closed
9 months ago
2
[pre-commit.ci] pre-commit autoupdate
#294
pre-commit-ci[bot]
closed
1 year ago
3
Previous
Next