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a-r-j
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graphein
Protein Graph Library
https://graphein.ai/
MIT License
1.03k
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Pip Installation Trouble
#85
chrisyeh96
closed
2 years ago
2
Package build
#84
a-r-j
closed
2 years ago
1
Bugfixes
#83
a-r-j
closed
2 years ago
1
not all ELEMENTX-ELEMENTY bonds are present in BOND_ORDERS lookup dictionary
#82
EyalRozenberg1
closed
2 years ago
2
bug: add_aromatic_interactions get None DataFrame
#81
EyalRozenberg1
closed
2 years ago
2
bug: 'continue' not properly in loop
#80
EyalRozenberg1
closed
2 years ago
0
The setup with Conda doesn't work as described
#79
avivko
closed
2 years ago
13
Bugfix for #41 and #74
#78
a-r-j
closed
2 years ago
1
Converting Networkx graph to PyG
#77
diamondspark
closed
2 years ago
5
Atom information
#76
shrimonmuke0202
closed
3 years ago
8
Saving in gexf format
#75
shrimonmuke0202
closed
3 years ago
1
Problem in add_atomic_edges
#74
shrimonmuke0202
closed
2 years ago
15
Add Multiprocessing to Protein Graph Construction
#73
a-r-j
closed
2 years ago
1
Multiprocessing for construction of graph lists
#72
a-r-j
closed
2 years ago
0
[WIP] Add dataloader classes
#71
a-r-j
closed
2 years ago
4
Installation problem
#70
shrimonmuke0202
closed
3 years ago
10
WIP: Add Dockerfile
#69
jadechip
closed
2 years ago
2
pytorch installation related issue
#68
sajidmahmud
closed
3 years ago
4
Bump pytorch3d from 0.2.0 to 0.5.0
#67
dependabot[bot]
closed
3 years ago
1
Bump tqdm from 4.60.0 to 4.62.2
#66
dependabot[bot]
closed
3 years ago
1
DGLError: Mutation is not supported in heterograph.
#65
jadechip
closed
3 years ago
1
conversion from/to nx <-> pyg/dgl draft + add baseline notebook
#64
kexinhuang12345
closed
3 years ago
1
Bump tqdm from 4.46.0 to 4.62.0
#63
dependabot-preview[bot]
closed
3 years ago
2
Bump tqdm from 4.46.0 to 4.61.2
#62
dependabot-preview[bot]
closed
3 years ago
1
Bump tqdm from 4.60.0 to 4.61.1
#61
dependabot-preview[bot]
closed
3 years ago
1
Bump tqdm from 4.60.0 to 4.61.0
#60
dependabot-preview[bot]
closed
3 years ago
1
RNA base pairing checks and pseudoknots
#59
a-r-j
closed
3 years ago
0
Bump biopandas from 0.2.4 to 0.2.8
#58
dependabot-preview[bot]
closed
3 years ago
1
Small tweaks and changes
#57
Seanny123
closed
3 years ago
0
Enable 3D visualisation with Plotly
#56
Seanny123
closed
3 years ago
0
Bump tqdm from 4.46.0 to 4.60.0
#55
dependabot-preview[bot]
closed
3 years ago
0
[WIP] Packaging
#54
a-r-j
closed
3 years ago
5
Bump pytorch3d from 0.2.0 to 0.4.0
#53
dependabot-preview[bot]
closed
3 years ago
1
Bump biopandas from 0.2.4 to 0.2.8
#52
dependabot-preview[bot]
closed
3 years ago
0
Bump tqdm from 4.46.0 to 4.59.0
#51
dependabot-preview[bot]
closed
3 years ago
1
Create Dependabot config file
#50
dependabot-preview[bot]
closed
3 years ago
0
Pre-processing code
#49
ericmjl
opened
3 years ago
0
Add GRN support
#48
rvinas
closed
3 years ago
2
Add support for GRNs
#47
rvinas
closed
3 years ago
0
Architectural issues and remediation paths
#46
ericmjl
closed
2 years ago
2
[TST] Add tests for protein graphs
#45
ericmjl
closed
3 years ago
5
Install problem
#44
UnicornH
closed
3 years ago
1
Merge DSSP functions into protein_vis
#43
cch1999
closed
3 years ago
0
add bond order assignment and ring status assignment to atomic graphs
#42
a-r-j
closed
3 years ago
5
Atom Graph Construction
#41
a-r-j
closed
2 years ago
5
Protein vis
#40
a-r-j
closed
3 years ago
2
Gene Regulatory Network Support
#39
a-r-j
closed
3 years ago
0
Protein graphs
#38
a-r-j
closed
3 years ago
2
Port DSSP Features to new API
#37
a-r-j
closed
3 years ago
1
[PPI Graphs] port ppi graph construction to new functional API
#36
a-r-j
closed
3 years ago
13
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