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a-r-j
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graphein
Protein Graph Library
https://graphein.ai/
MIT License
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fix edges functions adding nodes to graphs with chain selections #134
#136
a-r-j
closed
2 years ago
2
Cannot pickle after calling graphein.protein.subgraphs.extract_subgraph_from_chains()
#135
johnnytam100
closed
2 years ago
8
chain_selection returns KeyError: 'residue_name'
#134
johnnytam100
closed
2 years ago
6
Conversion module not populated in docs
#132
a-r-j
closed
2 years ago
1
Baselines notebook not rendering correctly in docs
#131
a-r-j
closed
2 years ago
1
Loading graph into pytorch_geometric
#130
johnnytam100
closed
2 years ago
5
Plot distribution of 3D vectors
#129
a-r-j
opened
2 years ago
0
Graph Coarsening to chain / SS Elements
#128
a-r-j
closed
2 years ago
1
Support for mmCIF Files
#127
a-r-j
opened
2 years ago
1
Add additional inputs for CLI
#126
a-r-j
opened
2 years ago
0
Offline usage?
#125
johnnytam100
closed
2 years ago
4
[WIP][Protein] add vector node features.
#124
a-r-j
closed
2 years ago
2
YAML Configs for existing methods
#123
a-r-j
opened
2 years ago
0
Add CA-CB node vector feature
#122
a-r-j
closed
2 years ago
0
[WIP] add PDB and PyMol utilities [utils]
#121
a-r-j
closed
2 years ago
1
Add sidechain vector node feature
#120
a-r-j
closed
2 years ago
0
[WIP] Minor Improvements and Doc Fixes
#119
a-r-j
closed
2 years ago
2
Plotly based visualisation of PPI Networks
#118
a-r-j
closed
2 years ago
1
Use multiprocessing graph constructor for CLI
#117
a-r-j
opened
2 years ago
0
Adds one-hot encoding of amino acids types as node feature
#116
a-r-j
closed
2 years ago
2
Sequence-based Edge function
#115
a-r-j
closed
2 years ago
0
Add distances as edge features
#114
a-r-j
closed
2 years ago
1
Added cli and yml parser
#113
ricomnl
closed
2 years ago
2
Cannot install environment-dev.yml on CPU
#112
josephmaa
closed
2 years ago
1
Apply same preprocessing as graphs to downloaded PDB in DSSP calculation
#111
diamondspark
closed
2 years ago
3
Subgraphs
#110
a-r-j
closed
2 years ago
2
RNA graph construction and KNN representation
#109
rg314
closed
2 years ago
4
Docker fix
#108
rg314
closed
2 years ago
2
[Bugfix] improve handling of insertions and altlocs #98
#107
a-r-j
closed
2 years ago
2
Still unable to use `add_aromatic_interactions`
#106
johnnytam100
closed
2 years ago
1
Installation in Colab notebook
#105
johnnytam100
closed
2 years ago
8
Subgraphs
#104
a-r-j
closed
2 years ago
1
[WIP] Graph Analytics
#103
a-r-j
closed
2 years ago
2
Create contributing.md
#102
TimothyStiles
closed
2 years ago
2
[Dev] add Devcontainer
#101
a-r-j
closed
2 years ago
2
added docker-compose and docker CICD for CPU and GPU
#100
rg314
closed
2 years ago
3
3.7
#99
a-r-j
closed
2 years ago
1
Number of nodes and shape of node coordinates differ by 1
#98
diamondspark
closed
2 years ago
4
Getting 61 descriptors for amino acid residues from ExPaSY ProtScale
#97
diamondspark
closed
2 years ago
4
Subgraphs
#96
a-r-j
closed
2 years ago
2
Edge function fixes
#95
a-r-j
closed
2 years ago
1
[Readme] add syntax highlighting to reference
#94
a-r-j
closed
2 years ago
1
[Bugfix] Fixes #74 by adding a check for sufficient CYS residues to a…
#93
a-r-j
closed
2 years ago
1
Edge fixes
#92
a-r-j
closed
2 years ago
1
[Tutorials] add interactive plotly example
#91
a-r-j
closed
2 years ago
1
[Package] fix incorrect scikit-learn dependency (#89)
#90
a-r-j
closed
2 years ago
1
Odd Sklearn Dependency
#89
chrisyeh96
closed
2 years ago
1
[Package] update manifest to include requirements and bump version to…
#88
a-r-j
closed
2 years ago
1
[Package] remove unsupported python versions from PyPI description
#87
a-r-j
closed
2 years ago
1
Graphein Version Inconsistency?
#86
chrisyeh96
closed
2 years ago
1
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