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a-r-j
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graphein
Protein Graph Library
https://graphein.ai/
MIT License
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Merge master
#194
a-r-j
closed
2 years ago
1
Loading 300,000 graphs that doesn't fit into memory
#193
johnnytam100
closed
2 years ago
3
1.5.0 patch3
#191
a-r-j
closed
2 years ago
2
Merge master -> Patch
#190
a-r-j
closed
2 years ago
1
1.5.0 patch3
#189
a-r-j
closed
2 years ago
1
DSSP Calculation always downloads new PDB file
#188
kamurani
closed
2 years ago
3
update bioservices to account for new UniProt API
#187
a-r-j
closed
2 years ago
2
Graph plots
#186
kamurani
closed
2 years ago
5
Fix param name typo in function docstring
#185
kamurani
closed
2 years ago
2
add pyg visualisation to ml module __init__
#184
a-r-j
closed
2 years ago
1
Add support for 3D RNA Graphs (#165)
#183
a-r-j
closed
2 years ago
2
ALA & GLY Missing from bond state mapping
#181
a-r-j
closed
2 years ago
1
chord_diagram / adj_mat
#180
avivko
closed
2 years ago
3
AttributeError: Can't get attribute '_unpickle_block' on <module 'pandas._libs.internals' from '/usr/local/lib/python3.7/dist-packages/pandas/_libs/internals.cpython-37m-x86_64-linux-gnu.so'>
#179
johnnytam100
closed
2 years ago
4
Can't plot adjacency matrix of subgraph
#177
kamurani
opened
2 years ago
8
Dssp and hover name
#176
avivko
closed
2 years ago
5
[Doc Migration] - Temporarily available at: https://tlb-lab.github.io/
#175
a-r-j
closed
2 years ago
1
Hotfix/insertions
#174
OliverT1
closed
2 years ago
2
Insertions always removed
#173
OliverT1
closed
2 years ago
4
Fixed dssp for local pdbs
#172
OliverT1
closed
2 years ago
2
local pdb + dssp = error
#171
avivko
closed
2 years ago
3
Asteroid plot edges
#170
avivko
closed
2 years ago
7
Handle structural ensembles containing multiple models
#169
a-r-j
closed
2 years ago
1
Simplify AF2 structure retrieval
#168
a-r-j
closed
2 years ago
1
asteroid_plot: show_edges
#167
avivko
closed
2 years ago
3
Unnecessary print statement
#166
chrisyeh96
closed
2 years ago
2
Add support for 3D RNA Graphs
#165
a-r-j
closed
2 years ago
3
Protein_ligand graph support & junction tree feature
#164
yuanqidu
opened
2 years ago
4
Update multiprocessing, CLI and molecular graph utils
#163
a-r-j
closed
2 years ago
3
Protein-Ligand Interaction Graphs
#162
a-r-j
opened
2 years ago
3
1.4.0
#160
a-r-j
closed
2 years ago
1
1.4.0
#159
a-r-j
closed
2 years ago
1
update eigenvector computation method #156
#158
a-r-j
closed
2 years ago
2
add mol support
#157
yuanqidu
closed
2 years ago
2
PowerIterationFailedConvergence
#156
avivko
closed
2 years ago
3
Support for small molecules & Protein Ligands
#155
a-r-j
closed
2 years ago
3
Patch 1
#154
amorehead
closed
2 years ago
5
Update to v1.3.0
#152
a-r-j
closed
2 years ago
1
Update doc dependency
#151
a-r-j
closed
2 years ago
1
Hydrogen bond acceptor/donor features
#150
a-r-j
closed
2 years ago
2
Vector bugfix #148
#149
a-r-j
closed
2 years ago
1
C_beta_vector: altlocs
#148
avivko
closed
2 years ago
4
bugfix to distance edge func #146
#147
a-r-j
closed
2 years ago
2
Distance threshold edges not added to the graph
#146
a-r-j
closed
2 years ago
1
Coarsening #128
#144
a-r-j
closed
2 years ago
2
add graph equality funtions #142
#143
a-r-j
closed
2 years ago
2
Format inconsistency between graphs constructed by pdb_code and pdb_path?
#142
johnnytam100
closed
2 years ago
6
add sequence distance edges #115
#141
a-r-j
closed
2 years ago
1
Dataloaders
#140
a-r-j
closed
2 years ago
1
[WIP] Initial pass at GNN modelling feature
#139
a-r-j
closed
1 year ago
2
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