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a-r-j
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graphein
Protein Graph Library
https://graphein.ai/
MIT License
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control protein graph construction verbosity
#242
davidfstein
closed
1 year ago
4
Structure with 1 (or odd number) of Cysteine breaks add_salt_bridges
#241
universvm
closed
1 year ago
12
[pre-commit.ci] pre-commit autoupdate
#240
pre-commit-ci[bot]
closed
1 year ago
1
Add DSSP as node_metadata_functions returns error
#239
universvm
closed
1 year ago
5
Quiet mode for loading protein models
#238
davidfstein
closed
1 year ago
1
add_distance_threshold does not return a graph
#237
davidfstein
closed
1 year ago
3
dlopen Errors on Documentation for Dataloaders
#236
universvm
closed
1 year ago
1
is there a docker image on the hub
#235
skr3178
closed
1 year ago
17
Fix and improve the utilities for PyG
#234
anton-bushuiev
closed
1 year ago
11
[pre-commit.ci] pre-commit autoupdate
#233
pre-commit-ci[bot]
closed
1 year ago
1
Fix ml dataset
#232
kamurani
opened
1 year ago
1
Support for Python 3.11
#231
a-r-j
closed
1 year ago
0
Add minimal install workflow
#230
a-r-j
closed
1 year ago
2
Fix bug in `add_k_nn_edges` and add minor extension
#229
anton-bushuiev
closed
1 year ago
6
[pre-commit.ci] pre-commit autoupdate
#227
pre-commit-ci[bot]
closed
1 year ago
1
Catch AF2 download error #225
#226
a-r-j
closed
1 year ago
3
AlphaFold download function fails if nonexistent Uniprot ID entry / 404 error
#225
kamurani
closed
1 year ago
0
`ProteinGraphDataset` for pairs of proteins?
#224
kamurani
opened
1 year ago
3
Modify graphs.py to handle insertions when ` {'insertions': True}`
#223
manonreau
closed
1 year ago
2
Df processing #216
#222
a-r-j
closed
1 year ago
4
Logging
#221
a-r-j
closed
1 year ago
2
Correct the coordinates computation for small residue graohs, and when granularity: centroids
#220
manonreau
closed
1 year ago
3
NaN coordinates when granularity: centroids and on small residue graphs
#219
manonreau
closed
1 year ago
0
update conversion
#218
manonreau
closed
1 year ago
7
Networkx to pyg conversion loses track or edge features
#217
manonreau
opened
1 year ago
1
protein_df_processing_functions arg to ProteinGraphConfig does not process pdb dataframe
#216
alexanderbonnet
closed
1 year ago
2
change the pdb_paths working style and support for loading both local…
#214
1511878618
opened
1 year ago
6
1.5.2
#213
a-r-j
closed
1 year ago
2
Local dataset (#208)
#211
a-r-j
closed
1 year ago
2
Using both local and downloaded PDBs in ML DataLoaders
#210
a-r-j
opened
1 year ago
0
fix disulphide bond node filtering #205
#209
a-r-j
closed
1 year ago
3
Local dataset
#208
1511878618
closed
1 year ago
17
doc need to be updated
#207
1511878618
opened
1 year ago
0
fix `nodes` index access for `coords`
#206
kamurani
closed
1 year ago
1
Buggy graph encoding
#205
Vincentx15
closed
1 year ago
14
add ProteinsX dataset classes
#204
a-r-j
opened
1 year ago
3
V1.5.1
#201
a-r-j
closed
1 year ago
2
Missing Residue in resi_atoms.py
#200
EyalRozenberg1
closed
1 year ago
1
Check atoms are in the same chain always False
#199
EyalRozenberg1
closed
1 year ago
1
deprotonate pdb structure
#198
EyalRozenberg1
closed
1 year ago
1
Graph plots
#197
kamurani
opened
2 years ago
8
Construct_graphs_mp with esm_equence_embedding throws error
#196
avivko
closed
2 years ago
3
CLI support for graph transformation 'pipelines'
#195
kamurani
opened
2 years ago
2
Merge master
#194
a-r-j
closed
2 years ago
1
Loading 300,000 graphs that doesn't fit into memory
#193
johnnytam100
closed
2 years ago
3
1.5.0 patch3
#191
a-r-j
closed
2 years ago
2
Merge master -> Patch
#190
a-r-j
closed
2 years ago
1
1.5.0 patch3
#189
a-r-j
closed
2 years ago
1
DSSP Calculation always downloads new PDB file
#188
kamurani
closed
2 years ago
3
update bioservices to account for new UniProt API
#187
a-r-j
closed
2 years ago
2
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