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ababaian
/
serratus
Ultra-deep search for novel viruses
http://serratus.io
GNU General Public License v3.0
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Tracking and processing of putative detections
#78
rcedgar
closed
4 years ago
1
Reference-based assembly
#77
rcedgar
closed
3 years ago
7
cov3r pan-genome refinements
#76
ababaian
closed
4 years ago
7
Serratus v0.1.4 Production
#75
ababaian
closed
4 years ago
0
Scheduler autoscaling
#74
ababaian
closed
4 years ago
0
Scheduler autoscaling --- big changes don't pull unless you're ready
#73
brietaylor
closed
4 years ago
1
Assembler benchmarking
#72
rcedgar
closed
4 years ago
7
List of assemblers -- please contribute!
#71
rcedgar
closed
4 years ago
42
Scale-in capability
#70
ababaian
closed
4 years ago
1
Usability Improvements to Scheduler #1
#69
brietaylor
closed
4 years ago
0
Infrastructure QoL Changes
#68
brietaylor
closed
4 years ago
0
bwa integration into serratus
#67
ababaian
closed
4 years ago
0
Add ECS Instance Role to monitor terraform
#66
ababaian
closed
4 years ago
2
Assembly protocol of COV sequences
#65
JustinChu
closed
4 years ago
3
Updates for cov3r pan-genome
#64
rcedgar
closed
4 years ago
20
Add download retry - `fastq-dump` timeout error 3
#63
ababaian
closed
4 years ago
1
Initial commit of bin/ and bin/bvfilter
#62
rcedgar
closed
4 years ago
0
Genbank parser dev
#61
Bdegraaf1234
closed
3 months ago
10
Update documentation
#60
mathemage
closed
4 years ago
4
Initial commit of summarizer
#59
rcedgar
closed
4 years ago
15
Repository Re-organization
#58
ababaian
closed
4 years ago
4
Summarizer implementation
#57
rcedgar
closed
4 years ago
10
Update benchmarking script with new CLI
#56
victorlin
opened
4 years ago
7
Search the Zoonotic Reservoir for SARS-CoV-2
#55
ababaian
closed
4 years ago
2
Testing bvfilter
#54
rcedgar
closed
4 years ago
2
Create S3 VPC endpoint
#53
Bluestreak2k5
closed
4 years ago
5
AWS architecture Diagrams
#52
Bluestreak2k5
closed
4 years ago
1
bvfilter bugs & fixes
#51
rcedgar
closed
4 years ago
3
To pair or not to pair
#50
rcedgar
closed
4 years ago
1
Why just Cov?
#49
rcedgar
closed
4 years ago
3
Perform CoV Cross-validation (hold-out)
#48
rcedgar
closed
4 years ago
1
Blacklist implementation
#47
rcedgar
closed
4 years ago
3
Preserving full headers in pan-genome
#46
rcedgar
closed
4 years ago
7
Taxonomy identifiers for Cov reference database
#45
rcedgar
closed
4 years ago
13
Max RAM in EC2 compute nodes
#44
rcedgar
closed
4 years ago
1
Learning how to work with serratus repo
#43
rcedgar
closed
4 years ago
5
What data should be collected from first pass (the "big compute")
#42
rcedgar
closed
4 years ago
5
cov2 pan-genome refinements
#41
ababaian
closed
4 years ago
9
Check updated Automation of project `TODO List`
#40
mathemage
closed
4 years ago
1
Aggreggate Stats by ASG in Prometheus / Grafana
#39
brietaylor
closed
4 years ago
1
Implement a "Jump Server" for serratus
#38
brietaylor
closed
4 years ago
1
serratus-dl: Out of disk usage error
#37
ababaian
closed
4 years ago
0
cov1 Multiple Sequence Alignment
#36
ababaian
closed
4 years ago
9
Hard Optimize `bowtie2` alignment parameters
#35
ababaian
closed
4 years ago
3
include "WGS" in "Assay Type" field from SRA
#34
charlescongxu
closed
4 years ago
0
fatal error: unable to locate credentials
#33
brietaylor
closed
4 years ago
6
Error: No more processes: cannot run a single job.
#32
brietaylor
closed
4 years ago
4
Add ecsInstanceRole to terraform
#31
brietaylor
closed
4 years ago
1
Allow adding public keys to terraform config
#30
brietaylor
closed
3 years ago
2
Refactor worker nodes into ECS
#29
brietaylor
closed
3 years ago
0
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