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ababaian
/
serratus
Ultra-deep search for novel viruses
http://serratus.io
GNU General Public License v3.0
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Fixes to sumzer due to soft-clip fiasco
#128
rcedgar
closed
4 years ago
0
Fix sumzer (same fix as in container).
#127
rcedgar
closed
4 years ago
0
Add family pan-genome to summarizer
#126
rcedgar
closed
4 years ago
2
:construction: WIP: Batch run
#125
itzamna314
opened
4 years ago
7
cov3a Manual Blacklisting
#124
ababaian
closed
4 years ago
7
🐳 Copy minimal dependencies for merge
#123
itzamna314
closed
4 years ago
0
🐳 Use the AWS cli installer instead of pip
#122
itzamna314
closed
4 years ago
0
Move CONTRIBUTING.md contents into wiki pages
#121
victorlin
closed
4 years ago
1
:whale: Set env and workdir for merge
#120
itzamna314
closed
4 years ago
0
:whale: Copy flock from build stage
#119
itzamna314
closed
4 years ago
0
README feedback
#118
lisancao
closed
4 years ago
2
:zap: Configure AWS s3 block size
#117
itzamna314
closed
4 years ago
0
:bug: Install flock
#116
itzamna314
closed
4 years ago
0
:bug: Install jq in -align
#115
itzamna314
closed
4 years ago
0
:bug: Set BASEDIR in runtime images
#114
itzamna314
closed
4 years ago
0
Ms dev
#113
ababaian
closed
4 years ago
0
🐳 Only copy what we need from base container
#112
itzamna314
closed
4 years ago
0
🐳 extract minimum required files for dl into final stage
#111
itzamna314
closed
4 years ago
1
:whale: Use the simplest possible multi-stage builds
#110
itzamna314
closed
4 years ago
3
EDirect doesn't belong on Summarizer usage Wiki page?
#109
rcedgar
closed
4 years ago
1
Docker Optimization
#108
genomaxx
closed
4 years ago
1
Moving serratus
#107
victorlin
closed
4 years ago
1
Create a checklist for GenBank submission -- begin to automate for high throughput
#106
ababaian
opened
4 years ago
13
Notes on de novo assembly methods used for issue #71
#105
hussius
closed
4 years ago
0
Fix formatting
#104
hussius
closed
4 years ago
0
metaviralspades reference
#103
hussius
closed
4 years ago
1
Read QC before assembly
#102
rcedgar
closed
4 years ago
3
Deliver uniform annotation of reference coronavirus genomes
#101
taltman
closed
3 years ago
10
Incorporate CheckV for assessing binned viral genomes
#100
taltman
closed
4 years ago
1
Assembly QC by aligning reads to contigs
#99
rcedgar
closed
3 years ago
2
Update Summarizer in Production
#98
ababaian
closed
4 years ago
2
Digital kmer-based normalization
#97
taltman
closed
4 years ago
16
Sus scrofus samples with high or low virus abundance
#96
taltman
closed
4 years ago
8
Use human cell line samples with coronavirus DNA for developing benchmarking datasets
#95
taltman
closed
4 years ago
2
Reference-guided assembly pipeline
#94
taltman
closed
4 years ago
4
Incorporate auN metric from Heng Li
#93
taltman
closed
4 years ago
3
Make sure BCB2 team is on-boarded
#92
taltman
closed
4 years ago
4
Identify desired assembler output
#91
taltman
closed
3 years ago
3
Identify candidate read QC pipelines
#90
taltman
closed
4 years ago
1
Top candidates from first Zoonotic run for assembler testing
#89
rcedgar
closed
4 years ago
27
Disruption of write access to s3://serratus-public
#88
ababaian
closed
4 years ago
0
Serratus mission statement
#87
rcedgar
closed
4 years ago
11
State of Assembly
#86
ababaian
closed
4 years ago
13
Scheduler instance boot failure
#85
ababaian
closed
4 years ago
6
Datasets in 200505_zoonotic with human hosts?
#84
rcedgar
closed
4 years ago
3
Run Meta-data and Organization
#83
rcedgar
closed
4 years ago
16
Add indices to frequently queried columns in the scheduler.
#82
brietaylor
closed
4 years ago
0
Increase the autoscaling desired size gradually, plus metrics improvements
#81
brietaylor
closed
4 years ago
0
v0.1.4b hotfix
#80
ababaian
closed
4 years ago
0
Regional blacklist
#79
rcedgar
closed
4 years ago
2
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