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ababaian
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serratus
Ultra-deep search for novel viruses
http://serratus.io
GNU General Public License v3.0
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Create serratus_assembly_minimap2_qc.py
#178
rcedgar
closed
4 years ago
0
Coronaspades mis-assembly problems & assembly QC
#177
rcedgar
closed
3 years ago
16
Create model of Cov leader sequence to support annotation
#176
rcedgar
closed
4 years ago
12
Determine if contig terminates at 3' end of genome
#175
rcedgar
closed
4 years ago
2
Identify complete assemblies
#174
rcedgar
closed
4 years ago
7
Serraplace validation
#173
rcedgar
closed
3 years ago
3
Added serraplace: phylogenetic placement of contigs
#172
pierrebarbera
closed
4 years ago
0
Genbank Contributors List
#171
ababaian
closed
3 years ago
1
"Assemblability" score -- selecting datasets to assemble
#170
rcedgar
closed
3 years ago
6
Test bvfilter as alternative to checkv
#169
rcedgar
closed
4 years ago
4
Search for recombination events?
#168
rcedgar
opened
4 years ago
12
Top hit and identity analysis for assemblies
#167
rcedgar
closed
3 years ago
0
`cov4` Update notes
#166
ababaian
closed
3 years ago
1
New bat sequencing samples
#165
ababaian
closed
4 years ago
1
Migrating from Dockerhub to ECR
#164
ababaian
opened
4 years ago
6
Data streaming on `serratus-align` nodes
#163
ababaian
opened
4 years ago
0
First 1k assembler targets
#162
rcedgar
closed
4 years ago
24
Scheduler scaling
#161
brietaylor
closed
4 years ago
0
Scheduler scaling
#160
brietaylor
closed
4 years ago
2
Add To Contributors List
#159
ababaian
closed
4 years ago
8
Use blastn_vdb instead of bowtie2?
#158
rcedgar
closed
3 years ago
21
Flat-file summaries to help find big-money hits
#157
rcedgar
closed
4 years ago
0
Stuff
#156
brietaylor
closed
4 years ago
0
Postgres indexing and pg_stat_statements
#155
brietaylor
closed
4 years ago
0
Set-up "Instance health checks" with graceful shut-down
#154
ababaian
opened
4 years ago
0
serratus-align hotfix: Retry download if main genome fail is missing.
#153
brietaylor
closed
4 years ago
0
Add md5sum for new genomes
#152
brietaylor
closed
3 years ago
0
Implement diamond for alignment step
#151
rcedgar
closed
4 years ago
2
Add 2000605_rce_diamond.pdf
#150
rcedgar
closed
4 years ago
8
Cost and Scaling Improvements
#149
brietaylor
closed
4 years ago
0
Daily web site graphics
#148
rcedgar
closed
4 years ago
9
Detect mRNA leaders (and trailers?)
#147
rcedgar
closed
4 years ago
3
Chao-1 analysis
#146
rcedgar
closed
4 years ago
4
summarizer depth fix and add Serratax container
#145
rcedgar
closed
4 years ago
0
Implement a Cov "complete genome" blacklist
#144
rcedgar
closed
4 years ago
2
:mute: :whale: No worker logs in ECS
#143
itzamna314
closed
4 years ago
0
Silent Logging / Verbose Setting
#142
ababaian
closed
4 years ago
1
How to add images to wiki/img
#141
rcedgar
closed
4 years ago
6
Where are the novel Covs?
#140
rcedgar
closed
4 years ago
10
Migrate files out of img/
#139
victorlin
closed
4 years ago
3
2*4+1 = 9, not 7.
#138
brietaylor
closed
4 years ago
1
Scheduler scaling
#137
brietaylor
closed
4 years ago
0
finding environmental bacterial with virulence factors.
#136
bfjia
closed
4 years ago
10
Using Serratus to find environmental bacteria harbouring antimicrobial resistance genes.
#135
bfjia
closed
4 years ago
12
Summarizer Updates for next version
#134
ababaian
closed
4 years ago
2
`fastq-dump` ignore technical
#133
ababaian
closed
4 years ago
2
Added summarizer report example to img/ for wiki
#132
rcedgar
closed
4 years ago
2
Tantalus - R data exploration
#131
ababaian
closed
4 years ago
1
~~> The Assembly Benchmark <~~
#130
ababaian
closed
3 years ago
32
Add panlen and toplen to sumzer
#129
rcedgar
closed
4 years ago
0
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