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abdenlab
/
oxbow
Read specialized NGS formats as data frames in R, Python, and more.
https://lifeinbytes.substack.com/p/breaking-out-of-bioinformatic-data-silos
Apache License 2.0
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bam read error
#67
Liripo
opened
2 months ago
0
Updated `r-oxbow`'s dependencies
#66
CGMossa
opened
3 months ago
1
byte array offset overflow
#65
wangzhichao1990
opened
4 months ago
0
Status of CRAM support
#64
timothymillar
opened
5 months ago
0
Update dependencies
#63
ghuls
closed
7 months ago
1
Needs a logo
#62
thomas-reimonn
closed
8 months ago
1
chore: Correct download instructions link
#61
manzt
closed
9 months ago
0
v0.3.1
#60
manzt
closed
9 months ago
0
read_bam shouldn't require BAM index
#59
shenker
opened
9 months ago
0
Feature request: Return iterator of RecordBatches (in Python)
#58
shenker
opened
9 months ago
0
Add bed12 reader
#57
GarrettNg
opened
11 months ago
0
Remote file access
#56
GarrettNg
opened
11 months ago
1
Range query API
#55
GarrettNg
opened
11 months ago
0
Byte range mapping API
#54
GarrettNg
opened
11 months ago
0
Simplify GFF/GTF reader types
#53
GarrettNg
closed
10 months ago
0
Fastq file like objects and cleanup
#52
GarrettNg
closed
10 months ago
0
Refactor fasta reader index usage and allow filelike object use
#51
GarrettNg
opened
11 months ago
1
Update lock files
#50
GarrettNg
closed
1 year ago
0
Update version to 0.3.0
#49
GarrettNg
closed
1 year ago
0
Update dependencies
#48
GarrettNg
closed
1 year ago
0
InvalidReferenceSequenceName: Exception due to brackets in reference name
#47
JackCurragh
closed
1 year ago
2
Reading VCF files?
#46
ap--
closed
1 year ago
4
Add py-oxbow tests
#45
GarrettNg
closed
1 year ago
1
Add sphinx for py-oxbow documentation
#44
GarrettNg
closed
1 year ago
0
feat(bam): Parse tags into StructArray
#43
manzt
closed
1 year ago
2
Return references from BAM file
#42
pkerpedjiev
opened
1 year ago
0
Create GFF and GTF readers
#41
GarrettNg
closed
1 year ago
0
Get tag values from bam file
#40
pkerpedjiev
closed
1 year ago
3
oxbow: nested field translation
#39
nvictus
opened
1 year ago
0
oxbow: column selection
#38
nvictus
opened
1 year ago
1
Add zoom level support for bigwigs
#37
jackh726
closed
1 year ago
0
pyoxbow: sphinx API docs
#36
nvictus
closed
1 year ago
1
pyoxbow: test suite
#35
nvictus
closed
1 year ago
1
Add support for reading extra tags from a BAM file.
#34
ghuls
closed
1 year ago
1
Add file-like support for hts readers
#33
nvictus
closed
1 year ago
4
File like support and cleanup chrom handling
#32
jackh726
closed
1 year ago
1
Clean up
#31
GarrettNg
closed
1 year ago
0
Add vcf tests
#30
GarrettNg
closed
1 year ago
1
Added formatting check to ci
#29
pkerpedjiev
closed
1 year ago
0
Ran cargo fmt
#28
pkerpedjiev
closed
1 year ago
0
Add BigBedReader, complete with autosql parsing
#27
jackh726
closed
1 year ago
3
Some minor cleanups
#26
jackh726
closed
1 year ago
0
Add chrom to bigwig records and convert Records to GAT
#25
jackh726
closed
1 year ago
0
Add chrom field to bigwig records
#24
nvictus
closed
1 year ago
0
Move bigwig fixture to s3
#23
GarrettNg
closed
1 year ago
0
docs(bcf): fix docstring for correct syntax highlighting
#22
manzt
closed
1 year ago
0
Add a link to the API docs to the README.md
#21
pkerpedjiev
closed
1 year ago
0
Refactor vpos ranges
#20
nvictus
closed
1 year ago
0
Add bigwig support
#19
jackh726
closed
1 year ago
0
Add vcf tests
#18
GarrettNg
closed
1 year ago
1
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