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aineniamh
/
squirrel
GNU General Public License v3.0
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Could not solver for environment specs
#35
bastiaanvdroest
opened
3 days ago
0
tackle interclade alignment, but also with appropriate masking flags (snps and alignment issues that don't look quite right
#34
aineniamh
opened
1 week ago
0
annotated tree code with apobec3 props and counts on the tree
#33
aineniamh
opened
1 week ago
0
Error reprot
#32
lingxuan85511
opened
1 week ago
10
Can't find the file 'NC_063383.aln.cds.fasta' , How can I get it?
#31
YangJingqii
closed
1 week ago
3
Exclude file creation and applying to the fasta
#30
aineniamh
closed
2 weeks ago
0
Binary partition mask
#29
aineniamh
closed
2 weeks ago
0
Update README.md with bioconda install instructions
#28
pvanheus
closed
2 weeks ago
1
Minor updates to README and command help text
#27
rmcolq
closed
2 weeks ago
0
Phylo custom dev
#26
aineniamh
closed
3 weeks ago
0
change org of jclusterfunk
#25
aineniamh
closed
3 weeks ago
0
Add bioconda recipe
#24
pvanheus
closed
2 weeks ago
7
Report dev
#23
aineniamh
closed
3 weeks ago
0
Assigned reference sequence
#22
YangJingqii
closed
2 weeks ago
2
Dev
#21
rmcolq
closed
3 weeks ago
0
Report dev
#20
aineniamh
closed
3 weeks ago
0
Include background dev
#19
aineniamh
closed
3 weeks ago
0
Include background dev
#18
aineniamh
closed
3 weeks ago
0
merge in main
#17
aineniamh
closed
3 weeks ago
0
Dev
#16
rmcolq
closed
3 weeks ago
0
regularizing versions
#15
rmcolq
closed
3 weeks ago
0
force version
#14
rmcolq
closed
3 weeks ago
0
update nextflow_schema.json
#13
rmcolq
closed
1 month ago
0
updating readme
#12
aineniamh
closed
1 month ago
0
Alignment mask dev
#11
aineniamh
closed
1 month ago
0
Add nextflow integration
#10
rmcolq
closed
1 month ago
0
alignment mask added for clumps of snps and snps near N bases
#9
aineniamh
closed
1 month ago
0
Adding in QC utilities that identify reversions to reference, convergent mutations and suggest additional masking. Produces tree viz of flagged SNPs.
#8
aineniamh
closed
1 month ago
0
Path passed to jclusterfunk can't handle spaces
#7
rambaut
closed
2 weeks ago
1
Job failure
#6
ClaudeKwe
closed
1 week ago
2
ImportError: cannot import name 'DYNAMIC_FILL' from 'snakemake.common'
#5
BrightMAK
closed
2 weeks ago
2
updating reconstruction functions to dynamically find size of figure
#4
aineniamh
closed
9 months ago
0
Phylo dev
#3
aineniamh
closed
9 months ago
0
AttributeError
#2
denise0593
closed
1 year ago
3
Outfile flag issue
#1
arahatdohmh
closed
9 months ago
0