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alexlancaster
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pypop
PyPop: Python for Population Genomics
http://pypop.org
GNU General Public License v2.0
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Bump actions/upload-artifact from 3 to 4
#170
dependabot[bot]
closed
9 months ago
2
Bump actions/download-artifact from 3 to 4
#169
dependabot[bot]
closed
9 months ago
0
Bump actions/setup-python from 4 to 5
#168
dependabot[bot]
closed
9 months ago
3
Update numpy requirement from <=1.26.1 to <=1.26.2
#167
dependabot[bot]
closed
10 months ago
0
Prep for 1.0.0
#166
alexlancaster
closed
10 months ago
0
Release drafter
#165
alexlancaster
closed
10 months ago
0
fix missing data in TSV output, and refactor and add header names
#164
alexlancaster
closed
10 months ago
0
Allow linkage disequilibrium computations to be done from phased input data
#163
nabil161289
opened
10 months ago
3
2-locus LD statistics are not calculated in the TSV output files
#162
nabil161289
closed
10 months ago
15
Enable Zenodo upload support
#161
alexlancaster
closed
10 months ago
0
Fixed generation of `1-locus-genotype.tsv`, cleanup TSV unit tests
#160
alexlancaster
closed
10 months ago
0
[Documentation]: Clarify unphased nature of data in [Emhaplofreq] section in docs
#159
alexlancaster
closed
10 months ago
0
Output platform and Python version metadata for `--version` option
#158
alexlancaster
closed
10 months ago
0
New issue templates
#155
alexlancaster
closed
10 months ago
0
Reimplement `drand48()` and `srand48()` on Windows, re-enabling all unit tests on Windows
#154
alexlancaster
closed
10 months ago
0
PyPOP LD: unclear whether LD is phased or unphased
#153
nabil161289
closed
10 months ago
6
Fix `CustomBinning` filters on Windows and re-enable unit tests
#152
alexlancaster
closed
10 months ago
0
Problem with Linkage Disequilibrium and Wn calculations
#151
nabil161289
closed
10 months ago
6
Fix unit tests on arm64 architectures, fix some other memory leaks
#150
alexlancaster
closed
10 months ago
0
register workflow
#149
alexlancaster
closed
10 months ago
0
Cleanup builds, update numpy, force binary dependencies only
#148
alexlancaster
closed
10 months ago
0
Unit tests fail on M1 Mac
#147
odoublewen
closed
10 months ago
34
rename unit test gold directory to `gold-output`
#146
alexlancaster
closed
11 months ago
0
remove `psutil` - only used by a currently skipped unit test
#145
alexlancaster
closed
11 months ago
0
Update psutil requirement from <=5.9.5 to <=5.9.6
#144
dependabot[bot]
closed
11 months ago
2
Fix arm64 cross-compilation on MacOS
#143
alexlancaster
closed
11 months ago
0
PyPop 1.0.0b3 does not work on M1 Mac
#142
odoublewen
closed
11 months ago
3
update links to deleted & ambiguous alleles
#141
alexlancaster
closed
11 months ago
0
Improve docs by link to actual example files...
#140
odoublewen
closed
11 months ago
0
Enable MacOS Apple Silicon builds
#139
alexlancaster
closed
11 months ago
0
MacOS arm64 installation issue
#138
odoublewen
closed
11 months ago
3
update the links in docs on allele names
#137
alexlancaster
closed
11 months ago
3
Bump pypa/cibuildwheel from 2.16.1 to 2.16.2
#136
dependabot[bot]
closed
11 months ago
0
Convert unit tests to use new nomenclature + update docs
#135
alexlancaster
closed
11 months ago
0
Updating grant metadata for the zenodo upload
#134
alexlancaster
opened
11 months ago
1
Zenodo upload infrastructure
#133
alexlancaster
closed
11 months ago
0
Bump pypa/cibuildwheel from 2.16.0 to 2.16.1
#132
dependabot[bot]
closed
11 months ago
0
Zenodo upload
#131
alexlancaster
closed
11 months ago
1
formatting updates in the sample output
#130
alexlancaster
closed
11 months ago
3
Implement updating of version from git tag, and retagging from @jspaaks
#129
alexlancaster
closed
11 months ago
12
Preparation for beta version: update authors, release notes
#128
alexlancaster
closed
11 months ago
1
Bump pypa/cibuildwheel from 2.15.0 to 2.16.0
#127
dependabot[bot]
closed
12 months ago
3
Use standard `.tsv` suffix in place of `.dat`, keep track of generated files
#126
alexlancaster
closed
12 months ago
1
dynamic generation of number of TSV files based on input
#125
alexlancaster
closed
1 year ago
0
more informative default "placeholder" file names
#124
alexlancaster
closed
1 year ago
0
Update docs preparing for beta version
#123
alexlancaster
closed
1 year ago
0
added brief note
#122
rsingle
closed
11 months ago
0
add clarification about installing python 3 & pip
#121
rsingle
closed
1 year ago
0
More sensible defaults for interactive mode
#120
alexlancaster
closed
1 year ago
0
add GitHub Action: upload to main pypi
#119
alexlancaster
closed
1 year ago
0
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