alexsweeten snacc issues

alexsweeten / snacc

Normalized Compression Distance for Inferring Microbial Phylogenies

8 stars 4 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

A few cleanups to get snacc working again

#91 Benjamin-Lee closed 4 years ago
0
NCD for genomes?

#90 Benjamin-Lee closed 5 years ago
3
README update

#89 Benjamin-Lee closed 5 years ago
0
Close #87

#88 Benjamin-Lee closed 5 years ago
0
Remove jinja & simplify log file.

#87 alexsweeten closed 5 years ago
0
Removing non-essential elements

#86 alexsweeten opened 5 years ago
7
update docstring

#85 wilcas closed 5 years ago
0
Better distance matrix visualization

#84 Benjamin-Lee closed 5 years ago
10
Close #73

#83 Benjamin-Lee closed 5 years ago
3
Add examples to the docstrings

#82 Benjamin-Lee opened 5 years ago
0
Close #80

#81 Benjamin-Lee closed 5 years ago
0
Pipeline error!

#80 alexsweeten closed 5 years ago
15
Test if bwt actually makes faster compressors feasible

#79 alexsweeten closed 5 years ago
1
Short description of project

#78 Benjamin-Lee closed 5 years ago
4
[BUG] Distance matrix for test data not as expected

#77 wilcas closed 5 years ago
6
Bwt as bwte

#76 wilcas closed 5 years ago
1
Test Cython & see if compiling to C improves runtime

#75 alexsweeten closed 5 years ago
0
Implement BWT option using a reasonable amount of RAM

#74 wilcas closed 5 years ago
1
Add docstrings for each method.

#73 souravsingh closed 5 years ago
0
Set up readthedocs.org for the Sphinx docs

#72 Benjamin-Lee opened 5 years ago
0
Set up a Sphinx conf.py file in docs

#71 Benjamin-Lee closed 5 years ago
0
Make images in readme.md point to the GitHub url of the image, not the relative path

#70 Benjamin-Lee closed 5 years ago
0
Change repo name to snacc

#69 Benjamin-Lee closed 5 years ago
0
Submit to PyPI as a package

#68 souravsingh opened 5 years ago
3
Bwt disk new

#67 wilcas closed 5 years ago
0
Use isort on the import statements

#66 Benjamin-Lee closed 5 years ago
0
Remove -f and -d flags and make files and directories as arguments

#65 Benjamin-Lee closed 5 years ago
0
Suggestion: Make a submission to JOSS

#64 souravsingh closed 5 years ago
2
Clustering and tree plot should be a part of CLI

#63 souravsingh closed 5 years ago
1
Bwt option

#62 wilcas closed 5 years ago
1
Implement BWT function

#61 alexsweeten closed 5 years ago
0
Save output

#60 wilcas closed 5 years ago
0
Check if files are compressed already

#59 alexsweeten closed 5 years ago
0
Pass on output of distance matrix to clustering

#58 alexsweeten closed 5 years ago
0
bioncd-hackseq on server not updated with GitHub

#57 itsDagu closed 5 years ago
2
Save compressed files option

#56 wilcas closed 5 years ago
0
Compression cleanup

#55 Benjamin-Lee closed 5 years ago
0
fixing bwt-disk bug

#54 wilcas closed 5 years ago
0
Bwt disk

#53 wilcas closed 5 years ago
0
Add clustering method

#52 souravsingh closed 5 years ago
0
Create environment.yml for conda

#51 souravsingh closed 5 years ago
0
Add algorithms for scatter plot

#50 souravsingh closed 5 years ago
0
Add CLI to README

#49 wilcas opened 5 years ago
2
Create a requirement.yml

#48 alexsweeten closed 5 years ago
0
Benchmarking Spreadsheet

#47 alexsweeten closed 5 years ago
0
Implement a BWT option to our CLI

#46 wilcas closed 5 years ago
0
Explore lrzip as a compression algorithm

#45 alexsweeten closed 5 years ago
1
Explore BWT-Disk as a compression algorithm

#44 alexsweeten closed 5 years ago
6
Cool graphic/logo for BioNCD

#43 alexsweeten closed 5 years ago
1
Think of an alternative name for BioNCD

#42 alexsweeten closed 5 years ago
10