andersen-lab bjorn issues

andersen-lab / bjorn

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SARS-CoV-2 workflow comparison - kindly check if your work is represented correctly

#50 thomasbtf closed 2 years ago
4
Optimize OR queries for WHO lineages

#49 flaneuse opened 3 years ago
0
Bjorn logo 1

#48 AlaaALatif closed 3 years ago
0
Bjorn needs setup.py so that bjorn_utils can import

#47 kramesh1 opened 3 years ago
1
Hashtables for caching and analysis

#46 mindoftea opened 3 years ago
0
Documentation out of date

#45 mindoftea opened 3 years ago
0
out-of-frame substitutions follow deletion-based codon numbering

#44 AlaaALatif closed 3 years ago
0
Out of frame deletions in B.1.1.7 followed by erroneous mutations

#43 gkarthik closed 3 years ago
1
NCBI Upload Pipe

#42 kramesh1 closed 3 years ago
2
Split Pipeline and Outbreak.info code in Bjorn repo

#41 kramesh1 closed 3 years ago
3
Post inspection automation workflow in python

#38 kramesh1 closed 3 years ago
3
Streamline metadata interaction

#35 kramesh1 closed 3 years ago
3
pangolin dependency not available in v2.3.2, datafunk not available in v0.0.8

#34 kramesh1 closed 3 years ago
3
Auto-generation of updated README during release pipeline

#32 kramesh1 closed 3 years ago
1
Add second check for no insertions

#29 mark-fathom closed 3 years ago
0
Issue27 fix

#28 AlaaALatif opened 3 years ago
0
Implement corrected Deletion naming after PR #24

#27 AlaaALatif closed 3 years ago
3
Calculate insertions

#26 flaneuse opened 3 years ago
0
update from main

#25 AlaaALatif closed 3 years ago
0
Issue22 fix

#24 AlaaALatif closed 3 years ago
0
Austria geo normalization issues

#23 flaneuse opened 3 years ago
0
Count mutations produced by out-of-frame deletions

#22 gkarthik closed 3 years ago
0
Standardize position numbering with out-of-frame deletions

#21 gkarthik closed 3 years ago
0
Store sequences with Ns in positions with mutations

#20 gkarthik opened 3 years ago
9
Improve county-level normalization

#19 flaneuse opened 3 years ago
0
Maintenance I

#18 mindoftea closed 3 years ago
0
Translate non-ascii characters in location names to ascii for ease of parsing

#17 gkarthik opened 3 years ago
0
BUG: England not displayed in location lookup

#16 flaneuse opened 3 years ago
0
Bjorn1 sitrep

#15 AlaaALatif opened 3 years ago
0
Add pangolin lineage calls to pipeline

#14 gkarthik opened 3 years ago
0
fix puerto rico location normalization

#13 AlaaALatif closed 3 years ago
0
Further Swiss Normalization fixes

#12 corneliusroemer closed 3 years ago
0
Fixed Swiss normalisation for GADM

#11 corneliusroemer closed 3 years ago
2
Swiss fix

#10 corneliusroemer closed 3 years ago
0
Bjorn1 sitrep

#9 AlaaALatif closed 3 years ago
0
How is location name matching to ISO-3166 codes done?

#8 corneliusroemer closed 3 years ago
9
Normalised Admin1 Switzerland

#7 corneliusroemer closed 3 years ago
6
Bjorn1

#6 AlaaALatif closed 3 years ago
0
Bjorn1

#5 AlaaALatif closed 3 years ago
1
Bjorn1

#4 AlaaALatif closed 3 years ago
0
Dev

#3 AlaaALatif closed 3 years ago
0
Bjorn: Add tutorial notebooks for using Bjorn's support functions

#2 AlaaALatif closed 3 years ago
0
Genomic Surveillance: replace datafunk's sam_2_fasta with gofasta

#1 AlaaALatif closed 3 years ago
1