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andim
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pyrepseq
Python library for immune repertoire analysis
MIT License
15
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Make weighting in pc conditional unbiased
#49
jhenderson0
opened
2 weeks ago
0
Add variance estimator for cross pc
#48
jhenderson0
opened
3 weeks ago
0
Symdel manual lookup
#47
heartnetkung
closed
2 weeks ago
0
Symdel progress
#46
MVCowley
closed
2 months ago
1
Merging Tcr info functions
#45
andim
closed
2 months ago
0
Bump patch to v1.4.3
#44
yutanagano
closed
4 months ago
0
Update tcrdist names to capitalised form (TCRdist)
#43
yutanagano
closed
5 months ago
0
TypeError when using pcDelta with maxseqs parameter
#42
samefarrar
closed
5 months ago
0
Include additional grouping functionality for pc and Renyi entropy
#41
jhenderson0
opened
5 months ago
0
Update README.md
#40
yutanagano
closed
6 months ago
0
Improve cdr levenshtein
#39
yutanagano
closed
6 months ago
1
Fix bug in pcDelta when setting maxseqs
#38
yutanagano
closed
6 months ago
0
Provide links to primary publications
#37
andim
opened
6 months ago
0
Support partial TCRdist calculation with incomplete information
#36
andim
opened
6 months ago
2
Catch import errors for optional dependencies
#35
andim
closed
6 months ago
1
test stdpc_n
#34
yutanagano
opened
6 months ago
0
test varpc_n
#33
yutanagano
opened
6 months ago
0
test pc_n
#32
yutanagano
opened
6 months ago
1
Improve pc tests
#31
yutanagano
closed
6 months ago
0
Add informative warnings/errors for tcrdist dependent code
#30
yutanagano
closed
6 months ago
0
test pcDelta
#29
yutanagano
closed
6 months ago
0
test pc
#28
yutanagano
closed
6 months ago
0
minor bug in tcrdist calculation
#27
heartnetkung
closed
7 months ago
2
Improve test coverage
#26
yutanagano
opened
7 months ago
2
Fix function call discrepancies between TcrMetric and Tcrdist variants
#25
yutanagano
closed
7 months ago
0
Improve setup.py
#24
yutanagano
closed
7 months ago
0
Bug fix cdr3levenshtein
#23
yutanagano
closed
7 months ago
0
Fully integrate metrics module
#22
yutanagano
closed
7 months ago
2
Improve standardize_dataframe documentation, behaviour and give examples
#21
yutanagano
closed
7 months ago
2
fix issue raised by Rishika
#20
heartnetkung
closed
7 months ago
0
setuptools is somehow a hidden dependency?
#19
yutanagano
closed
7 months ago
3
Add documentation for tcr_metric submodule
#18
yutanagano
closed
7 months ago
1
Update nn.py
#17
rsaxena20
closed
7 months ago
1
Make full use of the TCR metric API
#16
yutanagano
closed
7 months ago
1
Refactor nearest neighbor module
#15
andim
closed
8 months ago
2
Merging information theory functions into main
#14
andim
closed
9 months ago
0
implement seqs2 feature as requested by James
#13
heartnetkung
closed
11 months ago
2
Improve standardize_dataframe documentation
#12
andim
closed
7 months ago
2
Add rapidfuzz as a dependency for completeness
#11
yutanagano
closed
11 months ago
0
Implement tcr_metric submodule
#10
yutanagano
closed
11 months ago
0
Update to tidytcells 2
#9
yutanagano
closed
11 months ago
0
implement symspell algorithm
#8
heartnetkung
closed
11 months ago
2
symspell implementation
#7
heartnetkung
closed
12 months ago
1
Pull Request for nearest neighbor search
#6
heartnetkung
closed
1 year ago
0
Io update
#5
yutanagano
closed
1 year ago
4
Refactor standardise
#4
yutanagano
closed
1 year ago
2
Fix error due to breaking change in tidytcells
#3
yutanagano
closed
1 year ago
0
Add option to skip gene standardisation in standardise_dataframe
#2
yutanagano
closed
1 year ago
1
Gene standardisation in standardise_dataframe, +docstring +unit tests
#1
yutanagano
closed
1 year ago
3