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apeltzer
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DeDup
A merged read deduplication tool capable to perform merged read deduplication on single end data.
GNU General Public License v3.0
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Update `build.gradle` for Gradle 8
#16
alexreg
closed
2 months ago
0
A Problem with EAGER at the level to remove duplicates.
#15
More92
closed
2 years ago
1
Update README with how it works
#14
jfy133
closed
3 years ago
0
JSON output malformed (edge case)
#13
apeltzer
closed
3 years ago
2
Output folder behaviour/error misleading
#12
jfy133
opened
4 years ago
0
Fix denominator in output stats to all mapped reads only, not all in BAM
#11
jfy133
closed
4 years ago
1
DeDup log file incorrectly reports deduplication rate
#10
jfy133
opened
4 years ago
0
Performance with large datasets
#9
lordkev
opened
4 years ago
2
Support CRAM input
#8
apeltzer
opened
5 years ago
0
Add option for unsorted output
#7
sc13-bioinf
closed
7 years ago
0
Also DeDup reads with ambiguous mapping
#6
sc13-bioinf
closed
7 years ago
1
Changed the implementation of DeDup
#5
sc13-bioinf
closed
8 years ago
0
Support treating all reads as merged (new -m option)
#4
sc13-bioinf
closed
8 years ago
0
output occurence count for non duplicates
#3
sc13-bioinf
closed
8 years ago
0
New implementation of DeDup
#2
sc13-bioinf
closed
8 years ago
0
No longer outputs a potential duplicate by forwards.put then immediat…
#1
sc13-bioinf
closed
8 years ago
0