applied-bioinformatics An-Introduction-To-Applied-Bioinformatics issues

applied-bioinformatics / An-Introduction-To-Applied-Bioinformatics

Interactive lessons in bioinformatics.

http://readIAB.org

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Update __init__.py

#332 ambadisuveer closed 3 years ago
0
Update __init__.py

#331 ambadisuveer closed 3 years ago
0
IAB loading on binder get stucked

#330 fabiodepa opened 3 years ago
1
Seems to be a small typo

#329 meszarosdalma opened 4 years ago
0
The implementation of affine gap penalty is not correct.

#328 TianyiShi2001 closed 4 years ago
1
hamming_distance() function in pairwise-alignment.md

#327 dabane-ghassan opened 4 years ago
0
pull some content and definitions into a new "Getting Started" chapter

#326 gregcaporaso opened 4 years ago
0
addition of draft machine learning chapter

#325 gregcaporaso closed 4 years ago
0
fixing a typo:

#324 LKruse1998 closed 4 years ago
2
expanded content

#323 gregcaporaso closed 4 years ago
0
fix version number typo

#322 gregcaporaso closed 4 years ago
0
content updates and build system tests

#321 gregcaporaso closed 4 years ago
0
error Sequence mapping and clustering

#320 theokirkland opened 4 years ago
0
Section 2.2.6.1: evaluate_search uses current_queries variable name?

#319 ryanjameskim opened 5 years ago
1
BUG: fixes #316

#318 gregcaporaso closed 5 years ago
0
MAINT: update dependencies of everything

#317 ebolyen closed 5 years ago
3
link to "one of most cited articles in modern biology" broken chap 2.1 para 1

#316 cmatKhan closed 5 years ago
2
Function show_F got an error in return

#315 danilotat opened 5 years ago
0
added dynamic tree visualization

#314 gregcaporaso closed 5 years ago
0
use labels instead of indices for lookups i n UPGMA demo

#313 gregcaporaso opened 5 years ago
0
Addresses #311

#312 gregcaporaso closed 5 years ago
0
inconsistent scale between heatmaps in Phylogenetic Reconstruction chapter

#311 gregcaporaso closed 5 years ago
1
Update multiple-sequence-alignment.md

#310 shiffer1 closed 5 years ago
0
Update phylogeny-reconstruction.md

#309 EllaSantanaPropper closed 5 years ago
0
adds Biological Information chapter

#308 gregcaporaso closed 4 years ago
0
Getting error while using blosum 62 instead of blosum 50

#307 talhaanwarch opened 5 years ago
0
Update pairwise-alignment.md

#306 gregcaporaso opened 5 years ago
0
BUG: fix missing section

#305 gregcaporaso closed 5 years ago
0
MAINT: updates to Getting Started chapter

#304 gregcaporaso closed 5 years ago
0
couple of maintenance issues

#303 gregcaporaso closed 5 years ago
0
ENH: add code of conduct

#302 gregcaporaso closed 5 years ago
0
added "The Dot plot" to heading

#301 ghost opened 6 years ago
1
remove domain from DOIs

#300 gregcaporaso closed 6 years ago
0
adds missing info to references

#299 gregcaporaso closed 6 years ago
0
MAINT: added missing acknowledgement

#298 gregcaporaso closed 6 years ago
0
MAINT: notebooks will be stored in IAB-notebooks, rather than top-level dir

#297 gregcaporaso closed 6 years ago
1
Change "word" to "kmer" in MSA chapter

#296 gregcaporaso opened 6 years ago
0
ENH: Dockerfile template for use in `built-iab`

#295 thermokarst closed 6 years ago
0
minor suggested edits to multiple-sequence-alignment.md in fundamentals

#294 AstrobioMike opened 6 years ago
0
very minor edits to pairwise-alignments.md and database-searching.md in fundamentals

#293 AstrobioMike closed 6 years ago
0
ENH: adds machine learning chapter

#292 gregcaporaso closed 5 years ago
0
Applications chapter idea: methods benchmark

#291 gregcaporaso opened 6 years ago
0
very minor suggestions to database-searching.md

#290 AstrobioMike closed 6 years ago
4
very minor suggestions to pairwise-alignment.md

#289 AstrobioMike closed 6 years ago
1
fix spelling errors

#288 khdc-me closed 6 years ago
1
TEST: replace deprecated runipy test with jupyter nbconvert

#287 gregcaporaso closed 6 years ago
0
TEST: update install process to use environment.yml

#286 gregcaporaso closed 6 years ago
2
adds co-author Matthew Dillon

#285 gregcaporaso closed 6 years ago
0
Is there a way to Read Interactively on Windows?

#284 NoamTene closed 6 years ago
2
adds JOSE paper submission

#283 gregcaporaso closed 6 years ago
0