aquaskyline SOAPdenovo2 issues

aquaskyline / SOAPdenovo2

Next generation sequencing reads de novo assembler.

GNU General Public License v3.0

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issues

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compilation is not working

#97 CodeBlack589 opened 2 months ago
0
compilation is not working on EL/rocky 9

#96 eylenth opened 5 months ago
0
get_scafSeq_to_fasta.pl script

#95 Wyclif3 opened 5 months ago
1
cannot open *.kmerFreq file after pregraph, then exit

#93 cqh1 opened 1 year ago
0
Challenges with Scaffold Statistics in SOAPdenovo2 Assembly: Number_of_contigs_in_scaffolds

#92 Simon602 opened 1 year ago
0
Using a compressed file during the "pregraph" process may lead to program exit

#91 shiinachaos opened 1 year ago
0
cgroup out-of-memory handler

#90 cnxiaobo94 opened 1 year ago
0
SOAPdenovo parameter -K

#89 17863952296 opened 1 year ago
0
SOAPdenovo2 installation error

#88 AbRawoof opened 1 year ago
3
Negative number of edges in pregraph

#87 Aphrix opened 2 years ago
0
compilation from source failed on debian11, gcc11.2 - patch added

#86 schloegl closed 3 months ago
2
Ran out of memory while applying -64982367872bytes

#85 WJT0925 opened 2 years ago
0
soap didn't read fastq files in Pregraph and Contig

#84 sqwwww closed 2 years ago
2
Getting the following Error during SOAPdenovo installation

#83 bandana98 closed 2 years ago
0
question about the output file .scafSeq file when using SOAPdenovo2

#82 wangc1106 closed 2 years ago
0
Are the new releases really new releases?

#81 reinator closed 2 years ago
1
not resolved gaps of 1 nucleotide

#80 glopatriello closed 2 years ago
1
soapaligner is not working

#79 chitiagarwal closed 2 years ago
5
final link failed: Nonrepresentable section on output

#78 iquasere closed 2 years ago
1
GapCloser: Segmentation fault (core dumped)

#77 iquasere closed 2 years ago
1
operation

#76 BAOjinbo closed 3 years ago
6
Empty fastq input results in infinite "air_return error" loop

#75 magcurly closed 3 years ago
1
Dealing graph with too many edges

#74 dfguan closed 2 years ago
1
About the err.txt

#73 Otis-chan closed 3 years ago
2
Tag r242

#72 njbooher closed 4 years ago
2
Soap denovo with multiple libraries

#71 jvkheni closed 4 years ago
0
Small N50 due to read length cutoff

#70 shanewidanagama closed 4 years ago
2
Compilation error

#69 pbravakos closed 4 years ago
1
High gap percentage in scaffold assembly

#68 shanewidanagama closed 4 years ago
0
segmentation fault (core dumped)

#67 bioramg closed 4 years ago
2
No arcs being generated, resulting in zero scaffolds

#66 mchaney1 closed 4 years ago
3
Cannot find SOAPdenovo2/SOAPdenovo2/GapCloser

#65 qbdong closed 4 years ago
1
In Makefile compilation do not considere CFLAGS arguments

#64 hdevillers closed 4 years ago
0
reading too few reads? Not supporting gz format?!

#63 bitcometz closed 4 years ago
3
standardPregraph/hashFunction.c

#62 xusailor closed 3 years ago
0
incompatible libbam.a

#61 xqhuang1018 closed 4 years ago
1
Error while Installation $make

#60 harigowthem closed 5 years ago
1
Config file

#59 SIlviaHinojosa closed 5 years ago
3
Make error with Ubuntu 18.04 LTS

#58 elvenwhite closed 5 years ago
2
Scaff step crashes because of long gzip command

#57 sturgman closed 5 years ago
0
SOAPdenovo-fusion

#56 garfring closed 5 years ago
0
much larger genome size

#55 zdz1989 closed 5 years ago
0
16435 Segmentation fault during pregraph step

#54 AllisonStander closed 4 years ago
0
Segmentation fault during contig step

#53 AllisonStander closed 5 years ago
1
make err

#52 seqyuan closed 5 years ago
1
Segmentation fault while reading fastq files

#51 abshah closed 5 years ago
1
Crashed building contigs

#50 shanesturrock closed 5 years ago
10
SOAPdenovo-fusion (command not found...)

#49 ptsij closed 6 years ago
4
About the setting of parameters

#48 Xuelei-Dai closed 6 years ago
0
Makefile:65: recipe for target 'SOAPdenovo-63mer' failed

#47 BenjaminGuinet closed 6 years ago
0