aquaskyline SOAPdenovo2 issues

aquaskyline / SOAPdenovo2

Next generation sequencing reads de novo assembler.

GNU General Public License v3.0

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issues

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set proper input

#46 mossishahi closed 6 years ago
1
"make install" is not available anymore

#45 hlfernandez closed 6 years ago
2
Respect CC/CXX/CFLAGS/CXXFLAGS variables. Respect site-wide samtools.

#44 mmokrejs closed 6 years ago
0
Update Makefile

#43 aquaskyline closed 6 years ago
0
Update Makefile

#42 aquaskyline closed 6 years ago
0
Update Makefile

#41 aquaskyline closed 6 years ago
0
Spkieliu

#40 aquaskyline closed 6 years ago
0
Error during compilation

#39 michaelgruenstaeudl closed 6 years ago
6
When reading in ".links" file, the first line with real data will be ignored.

#38 spikeliu closed 6 years ago
3
clarify if megahit is usable for mammalian de novo assembly

#37 antonkulaga closed 6 years ago
3
should have a real config.example

#36 spikeliu closed 6 years ago
1
It seems that with very low numbers of edges, insufficient memory is …

#35 twmccart closed 6 years ago
0
GapCloser max read size?

#34 r1corre closed 6 years ago
1
how to choose the kmer number for the genome assembly.

#33 fhu2008-tio closed 6 years ago
1
Error reading FASTA files

#32 abshah closed 7 years ago
4
fixed issue #15. infinate loop if input file is not correct fastq format

#31 cchd0001 closed 7 years ago
1
bug report

#30 cchd0001 closed 7 years ago
0
fixed small bugs in sparse module.

#29 cchd0001 closed 7 years ago
1
SOAPdenovo-127mer going only to kmer of 63

#28 opatty closed 7 years ago
4
Segmentation fault with scaff step when use different MEGAHIT's output

#27 YiweiNiu closed 7 years ago
5
How to use SOAPdenovo-fusion scaffold the output of MEGAHIT?

#26 YiweiNiu closed 7 years ago
7
for SOAPdenovo-fusion

#25 SiyuanZhangB closed 7 years ago
2
When I used fusion module no Arc file is created

#24 FaragIF closed 7 years ago
1
finalFusion: not enough memory error (but enough is available)

#23 quokkamole closed 7 years ago
1
version `GLIBCXX_3.4.20' not found

#22 aersoares81 closed 7 years ago
1
Sequence orientation of the output?

#21 qslin closed 7 years ago
1
Need assistance

#20 sagnikbanerjee15 closed 7 years ago
1
Updated top level Makefile for appropriate making of -127mer binary.

#19 ibio-project closed 7 years ago
2
binaries of newer versions

#18 KamilSJaron closed 7 years ago
8
Segmentation faul with scaff step after fusion and map

#17 astridboehne closed 7 years ago
14
Please add release tags

#16 tillea closed 7 years ago
2
aio_return error

#15 dcopetti closed 7 years ago
11
glibc detected error on cluster

#14 andreyurch closed 8 years ago
1
The header in SOAPdenovo output ?

#13 ptranvan closed 8 years ago
3
GapCloser development

#12 sklages closed 8 years ago
1
segment fault when use staff -F option

#11 starnight0 closed 8 years ago
1
segmentation fault when running SOAPdenovo2 with low k-mer size and sparse pregraph

#10 jvollme closed 8 years ago
1
how to use multi-kmer option: setting kmer step size and minimum k-mer size

#9 jvollme closed 8 years ago
1
example config file missing ?

#8 blaiseli closed 8 years ago
1
contig failing on bubble pinching

#7 travc closed 9 years ago
2
standard pregraph bug when using large number of threads

#6 travc closed 9 years ago
2
Added missing "#include <unistd.h>" in several souces

#4 chenghlee closed 9 years ago
0
make error

#3 macmanes closed 9 years ago
3
Fix undefined reference to `call_pregraph_sparse'

#2 bmpvieira closed 9 years ago
0
Does not build on Mac OS: error: 'spinLock.h' file not found

#1 sjackman closed 10 years ago
15