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aresti
/
primalscheme
a tool for designing primer panels for multiplex PCR.
GNU General Public License v3.0
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Tiling primer design for whole genome
#42
SwathiNadendla
opened
1 month ago
0
Repair flag
#41
EldeVries
opened
3 months ago
0
Update build system to flit_core
#40
takluyver
opened
9 months ago
0
error with Apple M1
#39
virologist
opened
9 months ago
0
Troubleshooting Error
#38
bmbrown317
opened
1 year ago
1
Primalscheme
#37
ketandhede
opened
1 year ago
0
https://primalscheme.com/ not working
#36
nathania-dabilla
opened
2 years ago
4
Primer Schemes for Divergent Viruses
#35
AMPByrne
opened
2 years ago
1
Sanger sequencing
#34
isabelluo
opened
2 years ago
0
Excluding reference: unable to align.
#33
SticaC
opened
2 years ago
0
annealing temperature default
#32
isabelluo
opened
2 years ago
1
suggestion to hair pin temperature
#31
isabelluo
closed
2 years ago
4
Is --repair available?
#30
jasonsydes
opened
2 years ago
5
Enable schemes for segmented viruses
#29
joshquick
opened
3 years ago
1
Add homodimer to hard filter and use 3' exact matches for heterodimer checks
#28
joshquick
closed
3 years ago
3
Feat improved indel handling
#27
aresti
closed
3 years ago
1
Adapt method for targetted tiled sequencing?
#26
matbeale
opened
3 years ago
6
Max Poly-X
#25
JFresnedo
closed
4 years ago
1
No overlap promt
#24
nmitr
opened
4 years ago
2
Allow inputs with IUPAC ambiguity codes
#23
aresti
closed
4 years ago
1
No error raised when >2 --amplicon size values passed to CLI
#22
aresti
opened
4 years ago
0
Log only displays top 10 candidates even when >= 10 skipped due to interactions
#21
aresti
opened
4 years ago
0
Silent switch which turns off all output to STDOUT
#20
joshquick
opened
4 years ago
0
Currently allows blank prefix which results in hidden files
#19
joshquick
closed
4 years ago
1
Primers overlap within pools when very large overlaps are requested
#18
joshquick
closed
4 years ago
1
Change --min-overlap to --target-overlap
#17
joshquick
closed
4 years ago
1
Use PRIMER_MIN_THREE_PRIME_DISTANCE to ensure unique pairs
#16
joshquick
closed
4 years ago
1
Last region should prefer to maintain overlap
#15
aresti
closed
4 years ago
1
Show version with -V
#14
joshquick
closed
4 years ago
0
Check for heterodimers within same pool
#13
joshquick
closed
4 years ago
1
GC-skew shown in PDF not %GC
#12
joshquick
closed
4 years ago
0
BED file format needs strand
#11
joshquick
closed
4 years ago
0
could not find cpp_functions.so - please reinstall
#10
aiqubo
closed
4 years ago
4
Costa todo list
#9
joshquick
closed
4 years ago
0
Allow gaps in schemes rather than exiting
#8
joshquick
closed
6 years ago
0
Output log file containing alignments
#7
joshquick
closed
6 years ago
0
Multi record FASTA support
#6
joshquick
closed
4 years ago
0
Email results to user
#5
joshquick
closed
4 years ago
1
Queue jobs with celery to enable bigger jobs
#4
joshquick
closed
4 years ago
0
Validate sequence divergence
#3
joshquick
closed
4 years ago
0
Validate reference length differences and use for alignment window
#2
joshquick
closed
4 years ago
0
Report progress messages to user
#1
joshquick
closed
4 years ago
0