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arogozhnikov
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demuxalot
Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing
MIT License
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Added a BDRhapsody_specific.py and forced BarcodeHandler to read barc…
#33
leqi0001
closed
3 months ago
1
[solved] empty output after count_snps() with BD Rhapsody bam files
#32
leqi0001
opened
3 months ago
9
rewrite readme
#31
arogozhnikov
closed
9 months ago
0
Examples: Add simple custom tag example
#30
mschilli87
closed
9 months ago
1
bump version
#29
arogozhnikov
closed
9 months ago
0
delete previous deploy script
#28
arogozhnikov
closed
9 months ago
0
Update github workflows and move to pyproject.toml
#27
arogozhnikov
closed
9 months ago
0
Non cellranger tags
#26
mschilli87
closed
9 months ago
3
`BarcodeHandler.from_file`: Pass down parameters
#25
mschilli87
closed
9 months ago
2
Parameterize `parse_read` for custom UMI-tags etc.
#24
mschilli87
closed
9 months ago
4
How do I define which BAM tags contain the UMI / cell barcode?
#23
mschilli87
closed
9 months ago
16
Demuxafy problems: can't open file 'Demuxalot.py'
#22
MrLocuace
opened
10 months ago
3
Demuxafy question: Is demux.py the same as Demuxalot.py?
#21
MrLocuace
opened
10 months ago
3
update notebook
#20
arogozhnikov
closed
2 years ago
0
move genotypes to it's separate file, add methods of importing inform…
#19
arogozhnikov
closed
2 years ago
0
0.4.0: A bit simpler formulation for calling + minor improvements in speed
#18
arogozhnikov
closed
2 years ago
0
Using demuxalot for ATAC data
#17
himanshiarora7
opened
3 years ago
3
Questions about providing genotypes to demuxalot
#16
cartographerJ
opened
3 years ago
4
Parquet-ize betas (learnt genotypes data)
#15
arogozhnikov
closed
9 months ago
1
Create loaders for external data (BAM/VCF)
#14
arogozhnikov
closed
9 months ago
1
Add an example of running demuxalot on public data
#13
arogozhnikov
opened
3 years ago
0
add github action for pypi publishing
#12
arogozhnikov
closed
3 years ago
0
Add auto-deplyment of new versions to pypi
#11
arogozhnikov
closed
3 years ago
0
Improve tests
#10
arogozhnikov
closed
3 years ago
0
Deploy pypi
#9
arogozhnikov
closed
3 years ago
0
Add examples
#8
arogozhnikov
closed
3 years ago
0
better readme description
#7
arogozhnikov
closed
3 years ago
0
add badge for test/deployment
#6
arogozhnikov
closed
3 years ago
0
Update readme after major update
#5
arogozhnikov
closed
4 years ago
0
Changes for smoother scaling and handling corner situations
#4
arogozhnikov
closed
4 years ago
0
Joblib can't pass objects larger that 2Gb between processes
#3
arogozhnikov
closed
4 years ago
1
Interface changes
#2
arogozhnikov
closed
4 years ago
0
changes to output
#1
arogozhnikov
closed
4 years ago
0