arogozhnikov demuxalot issues

arogozhnikov / demuxalot

Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing

MIT License

23 stars 3 forks source link

issues

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Added a BDRhapsody_specific.py and forced BarcodeHandler to read barc…

#33 leqi0001 closed 1 month ago
1
[solved] empty output after count_snps() with BD Rhapsody bam files

#32 leqi0001 opened 2 months ago
9
rewrite readme

#31 arogozhnikov closed 7 months ago
0
Examples: Add simple custom tag example

#30 mschilli87 closed 7 months ago
1
bump version

#29 arogozhnikov closed 7 months ago
0
delete previous deploy script

#28 arogozhnikov closed 7 months ago
0
Update github workflows and move to pyproject.toml

#27 arogozhnikov closed 7 months ago
0
Non cellranger tags

#26 mschilli87 closed 7 months ago
3
`BarcodeHandler.from_file`: Pass down parameters

#25 mschilli87 closed 7 months ago
2
Parameterize `parse_read` for custom UMI-tags etc.

#24 mschilli87 closed 7 months ago
4
How do I define which BAM tags contain the UMI / cell barcode?

#23 mschilli87 closed 7 months ago
16
Demuxafy problems: can't open file 'Demuxalot.py'

#22 MrLocuace opened 8 months ago
3
Demuxafy question: Is demux.py the same as Demuxalot.py?

#21 MrLocuace opened 9 months ago
3
update notebook

#20 arogozhnikov closed 2 years ago
0
move genotypes to it's separate file, add methods of importing inform…

#19 arogozhnikov closed 2 years ago
0
0.4.0: A bit simpler formulation for calling + minor improvements in speed

#18 arogozhnikov closed 2 years ago
0
Using demuxalot for ATAC data

#17 himanshiarora7 opened 2 years ago
3
Questions about providing genotypes to demuxalot

#16 cartographerJ opened 3 years ago
4
Parquet-ize betas (learnt genotypes data)

#15 arogozhnikov closed 7 months ago
1
Create loaders for external data (BAM/VCF)

#14 arogozhnikov closed 7 months ago
1
Add an example of running demuxalot on public data

#13 arogozhnikov opened 3 years ago
0
add github action for pypi publishing

#12 arogozhnikov closed 3 years ago
0
Add auto-deplyment of new versions to pypi

#11 arogozhnikov closed 3 years ago
0
Improve tests

#10 arogozhnikov closed 3 years ago
0
Deploy pypi

#9 arogozhnikov closed 3 years ago
0
Add examples

#8 arogozhnikov closed 3 years ago
0
better readme description

#7 arogozhnikov closed 3 years ago
0
add badge for test/deployment

#6 arogozhnikov closed 3 years ago
0
Update readme after major update

#5 arogozhnikov closed 4 years ago
0
Changes for smoother scaling and handling corner situations

#4 arogozhnikov closed 4 years ago
0
Joblib can't pass objects larger that 2Gb between processes

#3 arogozhnikov closed 4 years ago
1
Interface changes

#2 arogozhnikov closed 4 years ago
0
changes to output

#1 arogozhnikov closed 4 years ago
0