axiezai pipetography issues

axiezai / pipetography

Nipype and tractography!

https://axiezai.github.io/pipetography/

Apache License 2.0

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issues

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Adding FA Weighting for pipetography

#43 benjaminsipes opened 2 years ago
0
Invalid first line for key/value file

#42 ctlin001 opened 2 years ago
2
fixed genericLabel > GenericLabel

#41 benjaminsipes closed 2 years ago
0
Connection in connectome needs to be a list

#40 axiezai closed 2 years ago
1
The debug mode conditions is wrong XD

#39 axiezai closed 2 years ago
0
Suppress warnings in notebooks for future docs

#38 axiezai opened 2 years ago
0
Added interpolation='genericLabel' fix

#37 benjaminsipes closed 2 years ago
0
Remove `args = genericLabel` and replace in `inputs.interpolation`

#36 axiezai opened 2 years ago
2
Fixed T1 reorient connection and connectomes pipeline sift_mask option

#35 benjaminsipes closed 2 years ago
1
Make GMWMI generation optional

#34 benjaminsipes closed 2 years ago
1
Remove `conda` from recipe

#33 axiezai opened 2 years ago
0
Remove connectomes rounding step

#32 benjaminsipes closed 2 years ago
0
Interpolation = genericLabel

#31 axiezai closed 2 years ago
0
Add `Reorient2Std` interface and connect, not release

#30 axiezai closed 2 years ago
0
Better module names and refactor

#29 axiezai opened 2 years ago
1
mrtrix3's 5ttgen creating questionable GM-WM interface segmentation

#28 axiezai closed 2 years ago
2
Debug mode

#27 axiezai closed 2 years ago
0
fix `base_dir` repetitive path

#26 axiezai closed 3 years ago
0
mrtrix3 3.0 now a default for neurodocker

#25 axiezai opened 3 years ago
1
connectome workflow needs sub-ses filtering

#24 axiezai closed 3 years ago
1
Segmentation workflow

#23 axiezai closed 3 years ago
0
Can't build docker image

#22 axiezai opened 3 years ago
0
Bump nokogiri from 1.10.8 to 1.11.2 in /docs

#21 dependabot[bot] closed 3 years ago
0
update instructions on `how to run`

#20 pfdamasceno closed 3 years ago
1
Working directory for workflow should also be specified somehow...

#19 axiezai closed 3 years ago
2
Add docker hub download instructions for setup

#18 axiezai closed 3 years ago
1
Remove freesurfer and matlab from environment check

#17 axiezai closed 3 years ago
1
WOP: reorganize

#16 pfdamasceno opened 3 years ago
1
testing...

#15 axiezai opened 3 years ago
1
Output datasink to BIDS structure

#14 axiezai closed 3 years ago
2
libopenblas.so.0 missing

#13 axiezai closed 3 years ago
1
Added postprocessing and connectome generation

#12 axiezai closed 3 years ago
0
More efficient freesurfer and white matter behavior

#11 axiezai closed 3 years ago
1
Fix container recipe to exclude conda environment step

#10 axiezai closed 3 years ago
1
Added nodes for creating WM mask from freesurfer output s

#9 axiezai closed 4 years ago
0
FS 7.1 hippocampal subfield incorrect inputs

#8 axiezai closed 3 years ago
1
version bumps

#7 axiezai closed 4 years ago
0
Rpe update

#6 axiezai closed 4 years ago
0
Docs/Instructions/Formatting

#5 axiezai closed 4 years ago
1
Bump nokogiri from 1.10.5 to 1.10.8 in /docs

#4 dependabot[bot] closed 4 years ago
1
Complete input features for certain commands

#3 axiezai opened 4 years ago
5
Update `settings.ini` with barebones requirements!

#2 axiezai closed 4 years ago
1
Set-up CI with neurodocker

#1 axiezai closed 4 years ago
1