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bailey-lab
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MIPTools
A suite of computational tools used for molecular inversion probe design, data processing, and analysis.
https://miptools.readthedocs.io
MIT License
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Version 0.5.0
#79
charliesimkin
closed
1 month ago
0
Eliminate probe sets json
#78
charliesimkin
closed
1 month ago
0
Probe sets json
#77
charliesimkin
closed
2 months ago
0
Start jupyter no metadata
#76
charliesimkin
closed
3 months ago
0
Update example_longitudinal_study.rst
#75
JeffAndBailey
opened
3 months ago
1
Pandas merge
#74
alfredsimkin
closed
4 months ago
0
fix def_files_location
#73
alfredsimkin
closed
4 months ago
0
Compress vcf
#72
charliesimkin
closed
4 months ago
0
Compress vcf
#71
charliesimkin
closed
4 months ago
0
Snake jupyter
#70
charliesimkin
closed
4 months ago
0
Jupyter for jeff
#69
alfredsimkin
closed
5 months ago
0
Snake jupyter
#68
alfredsimkin
closed
5 months ago
0
New tutorial interpretations
#67
alfredsimkin
closed
5 months ago
0
Choropleth
#66
charliesimkin
closed
5 months ago
0
Choropleth
#65
charliesimkin
closed
5 months ago
0
wrangling set-up new tutorial
#64
alfredsimkin
closed
5 months ago
0
Filter variants
#63
alfredsimkin
closed
5 months ago
0
Merge pull request #61 from bailey-lab/master
#62
alfredsimkin
closed
5 months ago
0
merge new edits into barcode_to_umi
#61
charliesimkin
closed
5 months ago
0
bring barcode up with master
#60
charliesimkin
closed
5 months ago
0
Sns pair plots
#59
alfredsimkin
closed
5 months ago
0
Clean up yamls
#58
alfredsimkin
closed
5 months ago
0
Sample groups
#57
alfredsimkin
closed
6 months ago
1
pulling in changes from the master branch
#56
alfredsimkin
opened
9 months ago
0
Bump readthedocs-sphinx-search from 0.1.1 to 0.3.2 in /docs
#55
dependabot[bot]
closed
5 months ago
0
Wrangler in sif
#54
alfredsimkin
closed
10 months ago
0
added user scripts
#53
charliesimkin
closed
10 months ago
0
3rd attempt at merging
#52
alfredsimkin
closed
10 months ago
0
Snakemake in sif
#51
alfredsimkin
closed
10 months ago
0
Snakemake in sif
#50
alfredsimkin
closed
10 months ago
0
Split up jupyter
#49
alfredsimkin
closed
10 months ago
0
Documentation fixes for v0.4.0
#48
arisp99
closed
1 year ago
0
Remove unused documentation branches
#47
arisp99
closed
1 year ago
0
Optimal downsampling of UMIs during wrangling
#46
JeffAndBailey
opened
1 year ago
0
Production edits
#45
asimkinbrown
closed
1 year ago
0
Edit punctuation
#44
asimkinbrown
closed
2 years ago
0
Unable to find C and C++ compilers during build
#43
arisp99
closed
2 years ago
2
Failure to assign replicates
#42
arisp99
opened
2 years ago
0
`MIPWrangler` and `elucidator` shared libraries error
#41
arisp99
closed
2 years ago
0
Downsample UMI counts
#40
arisp99
closed
2 years ago
3
Add a population clustering fraction cutoff argument
#39
arisp99
closed
2 years ago
0
mamba install freezes
#38
arisp99
closed
2 years ago
1
Wrangler app bad substitution error
#37
arisp99
closed
2 years ago
1
Don't store source code for programs
#36
arisp99
closed
2 years ago
0
Update muscle multiple sequence alignment program
#35
arisp99
closed
2 years ago
6
Installing bcl2fastq without rebuilding the container
#34
arisp99
opened
2 years ago
1
Freebayes fails with 1 thread
#33
arisp99
closed
2 years ago
4
Specify version number for installed software
#32
arisp99
closed
2 years ago
10
Specify version number for installed software
#31
arisp99
closed
2 years ago
0
Test data set analysis crashes
#30
arisp99
opened
2 years ago
0
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