bcgsc biobloom issues - Githubissues

bcgsc / biobloom

Create Bloom filters for a given reference and then use it to categorize sequences

http://www.bcgsc.ca/platform/bioinfo/software/biobloomtools

GNU General Public License v3.0

75 stars 15 forks source link

issues

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Need Filter File

#87 drhoads closed 6 months ago
15
Biobloom categorizer dies in a misterious way

#86 KristinaGagalova closed 9 months ago
5
Reproducible outputs

#85 vdechand closed 1 year ago
3
False positive

#84 adrienlemeur closed 1 year ago
3
Update README.md

#83 lcoombe closed 1 year ago
0
configure: error: Requires sdsl

#82 adrienlemeur closed 1 year ago
5
Check virus from human fastq

#81 lh12565 opened 2 years ago
12
Add recipe to conda

#59 kmnip closed 2 years ago
1
Missing header file "Common/Uncompress.h"

#58 simon28li closed 2 years ago
13
Set up CI with Azure Pipelines

#57 lcoombe opened 3 years ago
1
Error - installation latest biobloom

#56 KristinaGagalova closed 2 years ago
6
Update nthash to newest version

#55 JustinChu closed 4 years ago
0
Add score metric to summary

#54 JustinChu opened 4 years ago
0
Convergence not possible when using probability based binomial scoring

#53 JustinChu opened 4 years ago
0
Error thrown when k-mers where used with miBF code.

#52 JustinChu closed 4 years ago
0
During miBF construction automatically adjust occupancy to ensure minimum match length

#51 JustinChu opened 4 years ago
0
Run ntcard automatically before creating filter

#50 JustinChu opened 4 years ago
0
Segfault triggered by using multiple threads with -e option on a single file using multiple threads

#49 JustinChu closed 4 years ago
1
Issue compiling release 2.3.2

#48 jplaverdure closed 4 years ago
2
Project page link does not link to latest release

#47 jplaverdure closed 4 years ago
1
Add check for identical headers use multiple times

#46 JustinChu opened 5 years ago
0
Create indexable output

#45 JustinChu opened 5 years ago
0
Create indexable output

#44 JustinChu closed 5 years ago
0
biobloommicategorizer -- terminate called after throwing an instance of 'std::out_of_range'

#43 mcmero closed 5 years ago
8
Provide warning regarding filters with only a small number of targets <100 when using miBFs

#42 JustinChu closed 4 years ago
2
biobloommicategorizer crashes when using an input fasta file asking for an output fastq

#41 JustinChu opened 5 years ago
0
Update scoring model in normal BBT

#40 JustinChu closed 4 years ago
0
Update IO code

#39 JustinChu opened 5 years ago
0
How to create filters for many reference genomes?

#38 lh12565 closed 5 years ago
3
Question for installation

#37 lh12565 closed 5 years ago
2
paired end mode not working?

#36 aldertzomer closed 5 years ago
8
Spaced seed classification in Generic Bloom filter

#35 JustinChu opened 5 years ago
0
Can't compile on ubuntu 18.04

#34 TomHarrop closed 5 years ago
3
Update Linuxbrew version to 2.1.3

#33 JustinChu closed 5 years ago
0
Sdsl issue ?

#32 nektem closed 5 years ago
2
Gzip compression is very slow

#31 JustinChu opened 6 years ago
1
Problems compiling BBT on MacOS

#30 emreerhan closed 5 years ago
7
Build issues with Boost

#29 conchoecia closed 6 years ago
2
Fails with error: invalid variable name: `–-with-boost'

#28 conchoecia closed 6 years ago
2
Add option to exclude output of certain filters

#27 calchoo closed 6 years ago
1
Make inclusive mode for MIFB print out closest ID rather than dominating ID

#26 JustinChu closed 6 years ago
0
Detailed progressive bloom filter report

#25 JustinChu closed 6 years ago
3
Add multiIndex Bloom Filter code to a release version

#24 JustinChu closed 6 years ago
0
Improve behavior for progressive mode repeat/subtrative filter

#23 JustinChu closed 7 years ago
1
Tagging and recruitment based on quality string constraint

#22 JustinChu closed 5 years ago
3
Adding a license to a repository

#21 tmozgach closed 7 years ago
1
Adding a license to a repository

#20 tmozgach closed 6 years ago
3
Readme: Improved markdown formatting for GitHub.

#19 ewels closed 7 years ago
2
Revise --ordered option when paired matching

#18 JustinChu closed 7 years ago
1
Add smart pair for read pairs

#17 JustinChu closed 5 years ago
0