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bebop
/
poly
A Go package for engineering organisms.
https://pkg.go.dev/github.com/bebop/poly
MIT License
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Add fasta2 package
#337
folago
closed
11 months ago
6
fixed dev container to use most recent version of Go.
#336
TimothyStiles
closed
12 months ago
0
Devcontainer update
#335
TimothyStiles
closed
12 months ago
0
Changed Build to use an io.Writer
#334
Koeng101
closed
12 months ago
0
minimally functioning sam parser
#333
Koeng101
closed
8 months ago
3
add parser.line++ so error messages make sense
#332
Koeng101
closed
1 year ago
0
parser wasnt iterating lines, so error messages were nonsensical. Fixed
#331
Koeng101
closed
1 year ago
1
add bit comparing alignment techniques
#330
Koeng101
closed
1 year ago
0
Pileup parser
#329
Koeng101
closed
1 year ago
0
Add svb compression to slow5
#328
Koeng101
closed
11 months ago
2
slow5 doesn't detect newline
#327
Koeng101
opened
1 year ago
4
Updated fastq to solve #325 and #323
#326
Koeng101
closed
1 year ago
0
fastq de-aligned
#325
Koeng101
closed
11 months ago
2
fastq write gz
#324
Koeng101
closed
11 months ago
0
fastq doesnt handle optionals well
#323
Koeng101
closed
11 months ago
0
Ensure Non-Met start codons map to Met on translation
#322
carreter
closed
1 year ago
0
Fix consrtm w/o merge conflicts
#320
DevinRiley
closed
1 year ago
1
Remove redundant Linear struct member
#319
carreter
closed
1 year ago
0
Fix spelling errors
#318
mehulkar
closed
1 year ago
0
Functions for split sequence for scarless assembly using optimal overhangs
#317
isaacguerreir
closed
1 year ago
3
Improve fragment interface
#316
Koeng101
closed
1 year ago
2
bug fix amino acid capitalization
#315
Koeng101
closed
1 year ago
0
Add NdeI fixing plus regression
#314
Koeng101
closed
1 year ago
0
Failed to parse Saccharomyces cerevisiae S288C chromosome IX
#313
Koeng101
opened
1 year ago
8
updated example optimize
#312
Koeng101
closed
1 year ago
1
fix consrtm
#311
Koeng101
closed
1 year ago
2
Fail to parse Saccharomyces cerevisiae S288C chromosome I
#310
Koeng101
closed
11 months ago
4
Add checks for reverse sequence in fragment
#309
Koeng101
closed
1 year ago
0
CutWithRestrictionEnzyme now cuts across origins of circular sequences
#308
Koeng101
closed
1 year ago
0
Circular restriction cut
#307
Koeng101
closed
1 year ago
1
JCVI codon table generation is flat-out-wrong
#306
Koeng101
closed
1 year ago
2
Translate should have a setting to set first codon to M
#305
Koeng101
closed
1 year ago
2
Fix #303 and add regression test
#304
Koeng101
closed
1 year ago
3
JCVI-Syn3a fails to read
#303
Koeng101
closed
1 year ago
1
Fix GFF parser
#302
toothsy
closed
1 year ago
2
Certain tests fail on windows
#301
toothsy
opened
1 year ago
4
Add fastq parser
#300
Koeng101
closed
1 year ago
2
seqhash2
#299
Koeng101
closed
1 year ago
1
Slow5
#298
Koeng101
closed
1 year ago
4
PDBx Parser
#297
TimothyStiles
opened
1 year ago
10
fix comment typos
#296
ysung6
closed
1 year ago
1
Seqfold
#295
folago
closed
1 year ago
18
Alphabets and Substitution Matrices
#294
ragnorc
closed
1 year ago
4
Implement Zuker and basic DNA/RNA energistics
#293
TimothyStiles
closed
1 year ago
0
Smith-Waterman Algorithm
#292
ragnorc
closed
1 year ago
2
Implement Smith-Waterman alignment
#291
TimothyStiles
closed
1 year ago
1
Implement substitution matrices for alignment
#290
TimothyStiles
closed
1 year ago
2
Implement Zuker, 1981 dynamic folding algorithm
#289
TimothyStiles
closed
1 year ago
0
adding new alignment package and global alignment via Needleman-Wunsch
#288
TimothyStiles
closed
1 year ago
2
Parts tutorial
#287
TimothyStiles
closed
1 year ago
0
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