bedapub besca issues - Githubissues

bedapub / besca

BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis

https://bedapub.github.io/besca/

GNU General Public License v3.0

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issues

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error in bc.pl.riverplot_2categories() figsize param with besca253

#346 llumdi opened 4 weeks ago
0
percent_mito in reality reflects the fraction not the pct

#345 llumdi opened 4 weeks ago
0
Issue with tl.annotate_cells_cluster function

#344 prasadm1k opened 1 month ago
0
Bump pillow from 10.0.1 to 10.3.0 in /devtools

#343 dependabot[bot] opened 3 months ago
0
new 10x mtx version

#342 wangjiawen2013 opened 3 months ago
1
high memory consumption and nonetype error

#341 wangjiawen2013 opened 3 months ago
0
Update CellNames_scseqCMs6_Extrasigs.mouse.gmt

#340 swalpe opened 3 months ago
0
Bump grpcio from 1.53.0 to 1.53.2 in /devtools

#339 dependabot[bot] opened 4 months ago
0
Bump aiohttp from 3.9.0 to 3.9.2 in /devtools

#338 dependabot[bot] opened 5 months ago
0
Bump pillow from 10.0.1 to 10.2.0 in /devtools

#337 dependabot[bot] closed 3 months ago
1
Updated dblabels to correspond to db

#336 swalpe closed 5 months ago
1
Bump jinja2 from 3.0.3 to 3.1.3 in /devtools

#335 dependabot[bot] opened 5 months ago
0
Bump fonttools from 4.29.1 to 4.43.0 in /devtools

#334 dependabot[bot] opened 5 months ago
0
Update doc-tests.yml

#333 kohleman closed 7 months ago
0
Bump aiohttp from 3.8.5 to 3.9.0 in /devtools

#332 dependabot[bot] closed 7 months ago
0
Bump aiohttp from 3.8.5 to 3.8.6 in /devtools

#331 dependabot[bot] closed 7 months ago
1
Bump werkzeug from 2.2.3 to 3.0.1 in /devtools

#330 dependabot[bot] closed 7 months ago
0
Added cyno and kidney cell types

#329 swalpe closed 8 months ago
0
Bump urllib3 from 1.26.8 to 1.26.18 in /devtools

#328 dependabot[bot] closed 7 months ago
0
Bump pillow from 9.3.0 to 10.0.1 in /devtools

#327 dependabot[bot] closed 7 months ago
0
Bump urllib3 from 1.26.8 to 1.26.17 in /devtools

#326 dependabot[bot] closed 8 months ago
1
Update CellTypes_v1.tsv with cyno atlas cell types

#325 swalpe closed 9 months ago
0
Update CellTypes_v1.tsv

#324 swalpe closed 9 months ago
0
LFS quota exceeded

#323 idavydov opened 10 months ago
27
Bump flask from 2.0.3 to 2.2.5 in /devtools

#322 dependabot[bot] closed 9 months ago
0
Updated Endothelial signatures and added neuronal cell types

#321 swalpe closed 10 months ago
0
Allow flavor selection in `bc.st.highly_variable_genes()`

#320 llumdi opened 10 months ago
0
Bump tornado from 6.3.2 to 6.3.3 in /devtools

#319 dependabot[bot] closed 10 months ago
0
Adjusted HVG with batch selection

#318 kohleman closed 10 months ago
0
Move to poetry as a dependency manager

#317 kohleman opened 10 months ago
0
Update CellTypes_v1.tsv

#316 hatjek closed 11 months ago
0
Bump certifi from 2022.12.7 to 2023.7.22 in /devtools

#315 dependabot[bot] closed 11 months ago
0
Bump aiohttp from 3.8.1 to 3.8.5 in /devtools

#314 dependabot[bot] closed 11 months ago
0
Bump pygments from 2.11.2 to 2.15.0 in /devtools

#313 dependabot[bot] closed 11 months ago
0
`use_raw=False` not working in bc.tl.sig.combined_signature_score( )

#312 llumdi opened 11 months ago
0
Adjusted HVG with batch selection

#311 swalpe closed 10 months ago
0
309 re uploaded crispr data set to zenodo

#310 kohleman closed 11 months ago
0
re-uploaded Crispr data set to zenodo

#309 kohleman closed 11 months ago
0
Bump scipy from 1.8.0 to 1.10.0 in /devtools

#308 dependabot[bot] closed 12 months ago
0
Bump grpcio from 1.44.0 to 1.53.0 in /devtools

#307 dependabot[bot] closed 12 months ago
0
Use `cnamesDBlabel` instead of `cnames` to achieve consistency

#306 matchy233 closed 12 months ago
0
Update requirements.txt

#305 kohleman closed 12 months ago
0
Update requirements.txt

#304 kohleman closed 12 months ago
0
Update requirements.txt

#303 kohleman closed 12 months ago
0
Fix/doctest

#302 kohleman closed 12 months ago
0
Wrongly use `cnames` instead of `cnamesDBlabel` for annotation after reclustering

#301 matchy233 closed 12 months ago
0
Fix empty `levsk` while reading annotation config for pandas 2.0

#300 matchy233 closed 12 months ago
0
`IndexError: list index out of range` while running the cell annotation workbook

#299 matchy233 closed 12 months ago
2
env yaml file

#298 schmucr1 opened 1 year ago
2
fixed small bug in export pseudobulk raw

#297 swalpe closed 1 year ago
0