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bede
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kindel
Indel-aware consensus from aligned BAMs
GNU General Public License v3.0
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Does Kindel consensus consider base qualities?
#21
sureman
opened
2 years ago
1
Better handle deletions in N padded refs
#20
bede
opened
3 years ago
0
Update report format to include substitutions
#19
bede
opened
3 years ago
0
Output global alignment of input vs output?
#18
bede
opened
3 years ago
0
Implement adjustable consensus threshold
#17
bede
opened
3 years ago
0
ValueError: min() arg is an empty sequence
#16
joelnitta
closed
3 years ago
4
Test plotting
#15
bede
opened
4 years ago
1
'mask_ends' is not defined
#14
lneaves
closed
5 years ago
0
Replace N's with the reference
#13
migrau
opened
5 years ago
3
Test against large genomes
#12
bede
closed
4 years ago
1
Reimplement deprecated ` --threshold-weight` parameter from v0.1.4
#11
bede
opened
6 years ago
0
Wrapper for easy reference guided contiguation + consensus of assemblies
#10
bede
opened
6 years ago
2
Handle missing LN fields in @SQ headers
#9
bede
opened
6 years ago
1
Test against multiple contigs
#8
bede
closed
4 years ago
1
Test against long reads
#7
bede
opened
6 years ago
0
OOPify `bam_to_consensus()`
#6
bede
opened
6 years ago
0
Review handling of non-terminal Ns
#5
bede
opened
6 years ago
0
Test with graphmap, minimap2, bbmap
#4
bede
closed
4 years ago
1
Review handling of SAM 1.4+ CIGAR ops
#3
bede
opened
6 years ago
6
Missing setup.py version declarations
#2
bede
closed
6 years ago
1
Typo fix in bibtex
#1
arfon
closed
6 years ago
1