bede kindel issues - Githubissues

bede / kindel

Indel-aware consensus from aligned BAMs

GNU General Public License v3.0

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TypeError triggered by "NoneType" when running `kindel consensus` with realignment

#23 sivico26 opened 1 day ago
1
Does Kindel consensus consider base qualities?

#21 sureman opened 3 years ago
1
Better handle deletions in N padded refs

#20 bede opened 3 years ago
0
Update report format to include substitutions

#19 bede opened 3 years ago
0
Output global alignment of input vs output?

#18 bede opened 3 years ago
0
Implement adjustable consensus threshold

#17 bede opened 3 years ago
0
ValueError: min() arg is an empty sequence

#16 joelnitta closed 4 years ago
4
Test plotting

#15 bede opened 5 years ago
1
'mask_ends' is not defined

#14 lneaves closed 5 years ago
0
Replace N's with the reference

#13 migrau opened 6 years ago
3
Test against large genomes

#12 bede closed 5 years ago
1
Reimplement deprecated ` --threshold-weight` parameter from v0.1.4

#11 bede opened 7 years ago
0
Wrapper for easy reference guided contiguation + consensus of assemblies

#10 bede opened 7 years ago
2
Handle missing LN fields in @SQ headers

#9 bede opened 7 years ago
1
Test against multiple contigs

#8 bede closed 5 years ago
1
Test against long reads

#7 bede opened 7 years ago
0
OOPify `bam_to_consensus()`

#6 bede opened 7 years ago
0
Review handling of non-terminal Ns

#5 bede opened 7 years ago
0
Test with graphmap, minimap2, bbmap

#4 bede closed 5 years ago
1
Review handling of SAM 1.4+ CIGAR ops

#3 bede opened 7 years ago
6
Missing setup.py version declarations

#2 bede closed 7 years ago
1
Typo fix in bibtex

#1 arfon closed 7 years ago
1