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bergmanlab
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TELR
TELR is a fast non-reference transposable element detector from long read sequencing data.
https://github.com/bergmanlab/TELR
BSD 2-Clause "Simplified" License
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TELR only finds TE insertions on first chromosome
#38
lilypeck
opened
1 month ago
0
Issue with Contig Assembly in TELR
#37
prakashnarayanan98
opened
7 months ago
3
sniffles: error: the following arguments are required: -i/--input SV detection output not found, exiting...
#36
Kiliankleemann
opened
8 months ago
1
sniffles not found
#35
Kiliankleemann
closed
8 months ago
0
Installation issue with conda
#34
Kiliankleemann
opened
8 months ago
11
ValueError: start out of range (-878)
#33
UrsulaOggenfuss
closed
1 year ago
7
Fix filename too long error
#32
shunhuahan
closed
1 year ago
0
[Errno 7] Argument list too long: '/bin/sh'
#31
Morriyaty
opened
1 year ago
3
Fix file name too long issue
#30
shunhuahan
closed
1 year ago
0
OSError: [Errno 36] File name too long
#29
MrBleem
opened
1 year ago
14
failed to get the expected result using SRR11000304.fastq
#28
MrBleem
closed
1 year ago
2
Fix repeatmasker GFF2Bed out of sort issue
#27
shunhuahan
closed
1 year ago
0
KeyError type erro
#26
unavailable-2374
opened
1 year ago
1
Fix start out of range issue in assembly prep
#25
shunhuahan
closed
1 year ago
0
ValueError: start out of range
#24
thamala
closed
1 year ago
2
mutiple "is not defined in the header" issues
#23
jacopoM28
opened
1 year ago
3
Fix RM gff out of sort issue
#22
shunhuahan
closed
1 year ago
0
Sorting step only partially successful
#21
renhamm
closed
1 year ago
7
TELR call runs exceptionally long with little progression
#20
renhamm
closed
1 year ago
3
fix TSD length issue
#19
shunhuahan
closed
2 years ago
0
The warehouse can't be accessed. What's the matter?
#18
helan-1997
closed
2 years ago
0
what do multiple families listed in an individual hit mean?
#17
kerogens101
closed
2 years ago
2
after repeatmasker TELR fails with an error "/bin/sh: 1: file_name.realign.sort.bam: not found"
#16
SergeiF1987
closed
2 years ago
9
Bug fix
#15
shunhuahan
closed
2 years ago
0
Develop
#14
shunhuahan
closed
2 years ago
0
remove prediction redundancy
#13
shunhuahan
closed
2 years ago
1
Update AF algorithm and package TELR
#12
shunhuahan
closed
2 years ago
0
Add options used in TE AF estimation step
#11
shunhuahan
closed
2 years ago
0
Add flye
#10
shunhuahan
closed
2 years ago
0
Improve liftover
#9
shunhuahan
closed
2 years ago
0
Include minimap2 as alignment method
#8
shunhuahan
closed
3 years ago
0
merge master into develop
#7
shunhuahan
closed
2 years ago
0
Update env
#6
shunhuahan
closed
3 years ago
0
run in ERROR "Repeatmasking VCF insertion sequences failed, exiting..."
#5
wangnan9394
closed
2 years ago
6
error handling for zero prediction
#4
shunhuahan
closed
3 years ago
0
KeyError: 'score' during lift over
#3
elcortegano
closed
2 years ago
6
Problem setting TELR environment
#2
elcortegano
closed
3 years ago
4
Develop
#1
shunhuahan
closed
3 years ago
0