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bigbio
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py-pgatk
Python tools for proteogenomics analysis toolkit
Apache License 2.0
9
stars
11
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disable cbioportal download test
#83
ypriverol
closed
2 months ago
0
Dev
#82
ypriverol
closed
2 months ago
0
Spectrum ai
#81
ypriverol
closed
2 months ago
0
Spectrum ai
#80
ypriverol
closed
2 months ago
0
update new blast and spectrumAI
#79
DongdongdongW
closed
2 months ago
0
Minor bug fixed
#78
ypriverol
closed
2 months ago
0
spectrumAI into py-pgatk
#77
ypriverol
closed
2 months ago
0
update validate
#76
DongdongdongW
closed
2 months ago
0
Bump requests from 2.21.0 to 2.31.0
#75
dependabot[bot]
closed
2 months ago
2
vcf-to-proteindb returned incorrect amino acid sequences
#74
AlirezaShokrollahi
opened
1 year ago
0
fixes issue #72
#73
husensofteng
closed
1 year ago
0
Incompatible COSMIC mutation records
#72
husensofteng
opened
1 year ago
0
Fix the bug of class-fdr, adjust the blast to multi-process running t…
#71
DongdongdongW
closed
1 year ago
0
add spectrumAI
#70
DongdongdongW
closed
1 year ago
8
update
#69
ypriverol
closed
1 year ago
0
fixed bug in gtf file name, just keep version not release string
#68
ypriverol
closed
1 year ago
0
Improve test case to check download
#67
husensofteng
opened
2 years ago
0
change var_prefix
#66
husensofteng
closed
1 year ago
0
implement spectrumAI in pypgatk
#65
ypriverol
closed
1 year ago
3
major changes dealing with configs files
#64
ypriverol
closed
2 years ago
2
Updates version info for
#63
ypriverol
closed
2 years ago
0
changes in the generation for msrescore
#62
ypriverol
closed
2 years ago
0
Write urls for download into file instead of downloading
#61
ypriverol
closed
2 years ago
0
changes to fix problem with config files
#60
ypriverol
closed
2 years ago
0
gffread fasta generated file uses space and semicolon
#59
husensofteng
closed
2 years ago
1
changing values in the config files have no effect
#58
husensofteng
closed
2 years ago
0
Updated vcf-to-proteindb to parse using pandas
#57
husensofteng
closed
2 years ago
0
Implementation of Class FDR
#56
ypriverol
closed
2 years ago
10
pyVCF reader deprecated only supported for py3.6
#55
ypriverol
closed
2 years ago
0
Class FDR (Please do not merge, this yet)
#54
ypriverol
closed
2 years ago
3
reports error when ref/alt alleles are not set to nucleotides ACGT in…
#53
husensofteng
closed
2 years ago
0
Error: Codon '-CT' is invalid
#52
enriquea
closed
2 years ago
8
Dev
#51
enriquea
closed
2 years ago
0
Cleaning the code
#50
ypriverol
closed
2 years ago
1
Update the urlib library
#49
ypriverol
closed
2 years ago
1
Generating protein DB from custom VCF fails
#48
enriquea
closed
2 years ago
4
wrong cosmic proteins output
#47
GeorgesBed
closed
2 years ago
6
Bump urllib3 from 1.24.2 to 1.26.5
#46
dependabot[bot]
closed
2 years ago
1
Dev
#45
husensofteng
closed
3 years ago
0
Dev
#44
husensofteng
closed
3 years ago
1
Bump pyyaml from 5.1 to 5.4
#43
dependabot[bot]
closed
3 years ago
1
Dev
#42
husensofteng
closed
3 years ago
0
Major changes
#41
ypriverol
closed
3 years ago
0
Merge pull request #39 from bigbio/dev
#40
ypriverol
closed
3 years ago
0
Dev
#39
ypriverol
closed
3 years ago
0
Dev
#38
husensofteng
closed
3 years ago
0
Dev
#37
husensofteng
closed
3 years ago
1
Clean code style
#36
ypriverol
closed
3 years ago
0
Dev
#35
ypriverol
closed
3 years ago
0
Bump cryptography from 3.2 to 3.3.2
#34
dependabot[bot]
closed
3 years ago
1
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