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bingmann
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cobs
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
https://panthema.net/cobs
MIT License
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Iteratively adding documents
#24
josephhughes
opened
6 months ago
1
amino acid support
#23
jianshu93
opened
2 years ago
3
COBS for 600K genomes
#22
davidmaimoun
opened
2 years ago
3
Support all fasta file extensions listed in Wikipedia
#21
jnalanko
closed
2 years ago
0
Support more fasta file extensions
#20
jnalanko
opened
2 years ago
1
Fix undefined behaviour of char bit shifting when combining classic i…
#19
Zhicheng-Liu
opened
3 years ago
1
Reset output block after each batch when combining classic indices
#18
Zhicheng-Liu
opened
3 years ago
1
Expose classic combine
#17
giang-nghg
closed
3 years ago
0
Steps for compiling COBS on server with old GCC/C++/C compiler
#16
shenwei356
opened
3 years ago
0
conda package
#15
graceblackwell
opened
3 years ago
9
would it be hard to add k<31 support for .ctx files?
#14
iqbal-lab
closed
4 years ago
4
Provide the number of k-mers in the query
#13
graceblackwell
opened
4 years ago
3
Query length limit
#12
graceblackwell
opened
4 years ago
6
Error when using make -j4
#11
Danderson123
opened
4 years ago
3
Output of compact_construct extremely large
#10
MinghaoYan
closed
4 years ago
1
Build problems
#9
dpellow
closed
4 years ago
0
Failing to build COBS during make
#8
dpellow
closed
4 years ago
0
Fail during make -j4 (GCC8 is used)
#7
MinghaoYan
closed
4 years ago
1
build with llvm
#6
karasikov
opened
4 years ago
2
Possible false negatives in query
#5
hmusta
closed
4 years ago
8
Fails to Compile (Errors during 'make')
#4
Bradsol
closed
4 years ago
3
Build failing on ubuntu 16.04.5, gcc 5.4.0
#3
rsharris
closed
5 years ago
3
Fails to compile on Ubuntu 18.04.2
#2
sdwfrost
closed
5 years ago
2
Images for README.md
#1
bingmann
closed
5 years ago
0