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biocore
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American-Gut
American Gut open-access data and IPython notebooks
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Generate ovals dynamically from PCoA data
#68
cuttlefishh
closed
8 years ago
1
Add agplots files
#67
samfway
closed
10 years ago
16
Bug fix generate sig
#66
jwdebelius
closed
10 years ago
2
generate_otu_significance_tables
#65
wasade
closed
8 years ago
1
Removed ",draft" from line 1 of template_gut.tex. Miscellaneous changes...
#64
cuttlefishh
closed
10 years ago
0
FloatingPointError in generate_otu_signficance_table.py
#63
wasade
closed
8 years ago
1
Summarize meta data
#62
jwdebelius
closed
10 years ago
2
Add notebook to create module 1
#61
ElDeveloper
opened
10 years ago
1
Use un-rarefied OTU table
#60
ElDeveloper
closed
8 years ago
26
Moving this repository to biocore
#59
ElDeveloper
closed
10 years ago
4
Move ipynb/cluster_utils.py to a new repo
#58
josenavas
opened
10 years ago
2
New latex template for oral and skin. Reorganized latex directory.
#57
cuttlefishh
closed
10 years ago
4
Remove any commas from participant's name before creating \yourname{} macro
#56
cuttlefishh
closed
8 years ago
6
ignore contested strings
#55
wasade
closed
10 years ago
3
Improve description of how the OTU tables were created
#54
wasade
closed
8 years ago
1
initial module 2 processing template
#53
wasade
closed
10 years ago
3
Skips taxa with "[" character for rare/unique taxa
#52
jwdebelius
closed
10 years ago
4
Contested taxonomy groups should not necessarily show up as rare/unique
#51
wasade
closed
8 years ago
4
[WIP] Filtering notebook [WIP]
#50
adamrp
closed
10 years ago
25
Moved country legend in Fig.2 to top right, aligned to other legend.
#49
cuttlefishh
closed
10 years ago
12
Edited placement of Fig.1 ovals in latex file.
#48
cuttlefishh
closed
10 years ago
0
scrubbed 000002182
#47
wasade
closed
10 years ago
1
initial commit for cluster_utils.ipy
#46
wasade
closed
10 years ago
2
new ovals
#45
wasade
closed
10 years ago
1
Formatting updates
#44
jwdebelius
closed
10 years ago
16
import fix
#43
wasade
closed
10 years ago
3
make_phyla_plots.py does not import correctly
#42
wasade
closed
10 years ago
1
Template does not include barcode
#41
adamrp
closed
8 years ago
4
American gut fixes
#40
jwdebelius
closed
10 years ago
7
test_generate_otu_significance.py fails
#39
ElDeveloper
closed
10 years ago
6
fixed failing tests
#38
wasade
closed
10 years ago
1
TaxTree tests are failing
#37
ElDeveloper
closed
10 years ago
2
fold change is now rounded right
#36
wasade
closed
10 years ago
1
Sigdigitfix
#35
wasade
closed
10 years ago
2
Ag rounds 4 and 5
#34
wasade
closed
10 years ago
8
Formatting updates
#33
jwdebelius
closed
10 years ago
0
American gut fixes
#32
jwdebelius
closed
10 years ago
0
removed unclassified and fixed typos
#31
jwdebelius
closed
10 years ago
0
Fixed file saving
#30
jwdebelius
closed
10 years ago
0
Updated taxa significance generation
#29
jwdebelius
closed
10 years ago
0
Creates functional macros using taxtree
#28
jwdebelius
closed
10 years ago
0
Add VIM swap files and OSX .DS_Store to .gitignore
#27
ElDeveloper
closed
10 years ago
0
methods for fetching unique/rare taxa
#26
wasade
closed
10 years ago
8
Module2 modularization
#25
jwdebelius
closed
10 years ago
7
bug fix
#24
wasade
closed
10 years ago
2
Minor edits
#23
cuttlefishh
closed
10 years ago
7
removed yourname definition
#22
wasade
closed
10 years ago
0
Minor updates to template.tex and ball_legend.pdf. Updated all files in ...
#21
cuttlefishh
closed
10 years ago
3
Replaces '_' character with a '-'
#20
jwdebelius
closed
10 years ago
0
latest updates on template and others
#19
wasade
closed
10 years ago
0
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