issues
search
biocore
/
improved-octo-waddle
Balanced parentheses succinct data structure in Python
BSD 3-Clause "New" or "Revised" License
6
stars
7
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Creating bp.py, rmmtree.py, and bitvector.py
#58
constellation99
opened
3 weeks ago
0
Overflow error
#57
wasade
opened
4 months ago
0
Update pins
#56
wasade
closed
4 months ago
0
Potentially broken cython dep
#55
mortonjt
opened
1 year ago
4
Malformed skbio.TreeNode object has broken copy function
#54
mortonjt
opened
1 year ago
2
Wish list : ILR transform from bp trees
#53
mortonjt
opened
1 year ago
3
Remove GPL code
#52
wasade
closed
1 year ago
0
Only retain edges that exist in the tree
#51
wasade
closed
1 year ago
0
add simple load mechanism
#50
wasade
opened
2 years ago
0
kick build matrix
#49
wasade
closed
2 years ago
0
Prevent the single-node tree check from yielding "false positives" on linear trees; also fix the build
#48
fedarko
opened
2 years ago
4
carry over insert_multifurcation
#47
wasade
closed
2 years ago
0
well that was incorrect
#46
wasade
closed
2 years ago
0
handle none on edge_num
#45
wasade
closed
2 years ago
0
tweak our monkey patch
#44
wasade
closed
2 years ago
0
conv and write edges
#43
wasade
closed
2 years ago
0
add a test
#42
wasade
closed
2 years ago
0
test automate release
#41
wasade
closed
2 years ago
1
break out r, remove k0 as it was unused
#40
wasade
closed
2 years ago
0
Cleanup
#39
wasade
closed
2 years ago
0
avoid cache invalidation
#38
wasade
closed
2 years ago
1
Escape on write
#37
wasade
closed
2 years ago
0
Multiplacements
#36
wasade
closed
2 years ago
11
[Question] should n and nm be supported for placements?
#35
antgonza
opened
2 years ago
0
Placements
#34
wasade
closed
2 years ago
3
Edge numbering
#33
wasade
closed
2 years ago
3
newick writing support
#32
wasade
closed
2 years ago
2
Expose close
#31
wasade
closed
2 years ago
2
to_skbio_treenode ignores root length
#30
ElDeveloper
closed
4 years ago
2
Single node newick string seg faults
#29
ElDeveloper
closed
2 years ago
1
Update _bp.pyx
#28
esayyari
closed
4 years ago
5
Change "cdef"s to "cpdef"s
#27
esayyari
closed
2 years ago
1
Calling parse_newick on Newick strings that don't end in a semicolon hangs indefinitely
#26
fedarko
closed
2 years ago
1
provide a mechanism to get include directory
#25
wasade
opened
8 years ago
0
graft on .pxd files for release
#24
wasade
opened
8 years ago
0
__repr__ currently counts root as an internal node
#23
wasade
closed
2 years ago
0
raise if empty tree on shear and collapse
#22
wasade
closed
2 years ago
0
finish implementation and cythoning of remaining basal methods
#21
wasade
opened
8 years ago
2
remove select caches
#20
wasade
opened
8 years ago
2
refactor mM contained matrix to singular arrays
#19
wasade
opened
8 years ago
0
rename mM to something more apt
#18
wasade
opened
8 years ago
0
shed _rmM_tree code
#17
wasade
closed
8 years ago
0
easy execution of cdef and normal python unit tests
#16
wasade
opened
8 years ago
0
hook up to travis
#15
wasade
closed
8 years ago
0
fully type _conv
#14
wasade
opened
8 years ago
0
select(0, 0) has different behavior than select(1, 0)
#13
wasade
opened
8 years ago
0
minimize cpdef on functions of high use
#12
wasade
closed
8 years ago
0
support skbio's validate interface for diversity calculations
#11
wasade
closed
8 years ago
1
Use of np.uint32_t on returns may result in excessive casting
#10
wasade
closed
8 years ago
0
General attribute support
#9
wasade
opened
8 years ago
0
Next