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biocore
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redbiom
Sample search by metadata and features
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Pandas fix
#80
wasade
closed
5 years ago
0
adding python 3.6
#79
antgonza
closed
5 years ago
0
Obtain the tags associated with samples in a context
#78
wasade
closed
5 years ago
0
All public samples not being searched?
#77
adswafford
closed
5 years ago
4
added a conda recipe
#76
BenKaehler
closed
5 years ago
2
create a command to generate figure 2A of MS
#75
antgonza
closed
1 year ago
1
ENH/API: add in minimum count filtering on search
#74
wasade
closed
5 years ago
0
Doc update
#73
jwdebelius
closed
5 years ago
0
Pull down based on sample id
#72
jwdebelius
closed
5 years ago
4
Allow select samples from metadata to support cross-context queries
#71
ElDeveloper
opened
5 years ago
0
should some of the output be optional in redbiom.fetch.data_from_samples
#70
antgonza
closed
5 years ago
5
contexts parameter as a list of str
#69
antgonza
closed
1 year ago
4
Remap IDs to simplify storage for taxonomy, and simplify structures used for taxonomy
#68
wasade
closed
5 years ago
0
Get representative subset for a metadata category
#67
cuttlefishh
closed
1 year ago
1
Tag fetch
#66
wasade
closed
6 years ago
9
It would be nice to get the list of features in samples
#65
wasade
opened
6 years ago
0
Contexts should optionally store machine readable processing information
#64
wasade
opened
6 years ago
0
It should be possible to guess a context
#63
wasade
opened
6 years ago
1
support for randomly sampling
#62
antgonza
closed
5 years ago
1
parallel support via joblib
#61
antgonza
opened
6 years ago
0
Uniquify
#60
wasade
opened
6 years ago
0
Allow testing where a metadata value is None
#59
wasade
closed
6 years ago
0
On fetch, it should be possible to retain a non-ambiguous set
#58
wasade
closed
3 years ago
0
`redbiom search metadata` should support finding samples where a category is not null
#57
wasade
closed
6 years ago
1
fetch specific metadata categories
#56
wasade
closed
5 years ago
0
Ambiguous was backwards
#55
wasade
closed
6 years ago
0
Query a context for contained features or samples
#54
wasade
closed
6 years ago
2
PERF: sortedset to list for feature and sample data
#53
wasade
closed
6 years ago
1
If context creation fails, error gracefully
#52
wasade
closed
1 year ago
0
Remove whole contexts
#51
wasade
opened
7 years ago
0
search for phrases
#50
antgonza
closed
1 year ago
0
Changing version number
#49
josenavas
closed
7 years ago
0
expose tag admin-load_sample_data
#48
antgonza
closed
7 years ago
1
[WIP] Initial JS API
#47
josenavas
closed
6 years ago
0
Fixing instructions in readme
#46
antgonza
closed
1 year ago
1
On fetch, use HMGET
#45
wasade
opened
7 years ago
0
redbiom search metadata NUMBER should fail gracefully
#44
ElDeveloper
closed
1 year ago
2
redbiom summarize taxonomy should handle no hits gracefully
#43
wasade
closed
1 year ago
0
It should be possible to easily discover the metadata categories for a set of samples
#42
wasade
opened
7 years ago
0
Where queries should support "in" correctly when the left hand is a string
#41
wasade
closed
1 year ago
0
Discrepancy between metadata search and stored metadata
#40
wasade
opened
7 years ago
1
Let "redbiom fetch sample-metadata" print to stdout
#39
ElDeveloper
opened
7 years ago
0
pypi updates
#38
wasade
closed
7 years ago
3
Release fixes
#37
wasade
closed
7 years ago
3
@cuttlefishh I think these changes cover your observations
#36
wasade
closed
7 years ago
1
More aggressive null value filtering; explicit handling of casting on search
#35
wasade
closed
7 years ago
1
Feedback mechanism for when metadata appear funky
#34
wasade
closed
1 year ago
1
context:state
#33
wasade
closed
7 years ago
1
Describe the number of features contained in a context
#32
wasade
closed
7 years ago
1
Emp updates
#31
wasade
closed
7 years ago
2
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