biocore songbird issues

biocore / songbird

Vanilla regression methods for microbiome differential abundance analysis

BSD 3-Clause "New" or "Revised" License

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issues

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About SCFAs.

#170 orange-3711 opened 6 months ago
1
songbird multinomial error: negative dimensions are not allowed

#169 sherlyn99 closed 8 months ago
5
Error running the standalone version of songbird

#168 pyjm closed 1 year ago
14
q2-songbird biplot metadata issue

#167 pablocatarecha closed 1 year ago
4
Qiime Songbird Multinomial - 'Data Frame' Error

#166 nagr4657 closed 1 year ago
14
Is low values of Q2 fine to keep move forward for manuscript ?

#165 princy149 closed 1 year ago
2
collapsing at taxa level and then use in songbird pipeline is right way or not?

#164 princy149 closed 1 year ago
2
songbird qurro result export as ranking order csv format with log fold change values for groups

#163 princy149 closed 2 years ago
5
songbird installation with qiime2-2020.2 problem

#162 princy149 closed 1 year ago
4
Error message: UnboundLocalError: local variable 'i' referenced before assignment

#161 pig-raffles closed 1 year ago
5
M1 12.2.1 Mackbook air problems with instalation of songbird

#160 cortegas closed 1 year ago
1
X axis of the CV error plots or tensorboard plots

#159 manjumoorthy95 opened 2 years ago
4
Problems with installation

#158 pig-raffles closed 2 years ago
8
Songbird Input format

#157 y3zhu closed 1 year ago
2
REQUEST: any plan to package this for R?

#156 StfnRomano closed 2 years ago
1
Can songbird be used in a Jupyter notebook without command line wrappers?

#155 jolespin opened 2 years ago
11
README installation instructions don't seem to work

#154 wasade opened 3 years ago
3
missing column in songbird output

#153 bck243 opened 3 years ago
0
Songbird tensorflow error

#152 JGADuBose closed 2 years ago
6
songbird multinomial treating variables as categorical when they are numeric

#151 bck243 closed 3 years ago
7
Plugin error from songbird: 'Testing'

#150 bck243 closed 3 years ago
4
There was a problem importing redsea.biom: redsea.biom is not a(n) BIOMV210Format file

#149 bck243 closed 3 years ago
4
songbird 2?

#148 Alxdu opened 3 years ago
3
Plugin error from songbird

#147 brunobohn7 closed 3 years ago
7
ValueError: initial_value must have a shape specified: Tensor("random_normal:0", shape=(2, ?), dtype=float32)

#146 BrettLoman opened 3 years ago
1
About filtering the input biom file

#145 coralzhang opened 3 years ago
5
qiime2-2020.8 and songbird-1.0.3 unsatisfiable

#144 AbhishakeL closed 3 years ago
1
Songbird usage approach

#143 mTangherlini closed 3 years ago
1
using a subset of samples

#142 coralzhang closed 3 years ago
3
Memory errors for large datasets

#141 mortonjt opened 3 years ago
4
Fix, test, and document filtering bug

#140 fedarko closed 3 years ago
1
Off-by-one errors in filtering?

#139 fedarko closed 3 years ago
0
patsy.PatsyError: Error evaluating factor: NameError: name 'X' is not defined

#138 johannesbjork closed 3 years ago
3
ValueError: negative dimensions are not allowed

#137 mortonjt closed 1 year ago
4
formatting full factorial formula

#136 sformel closed 3 years ago
2
Multinomial regression continuous variable scaling

#135 ibrila closed 3 years ago
3
Using songbird standalone

#134 coralzhang opened 3 years ago
5
Error running songbird standalone

#133 swokybio opened 3 years ago
7
IndexError: Issue importing data into songbird?

#132 bck243 closed 4 years ago
2
Statistical assumptions?

#131 shenjean closed 3 years ago
2
log(a/b) - a and b values

#130 L-Boonstra closed 4 years ago
2
confusing ID column names

#129 redbluewater opened 4 years ago
1
TypeError: SparseDataFrame() takes no arguments

#128 sformel opened 4 years ago
6
Replace conda-forge with pip in Q2 install instructions

#127 fedarko closed 4 years ago
1
More QIIME 2 / TensorFlow conda-forge installation problems ._.

#126 fedarko opened 4 years ago
6
Post release update

#125 mortonjt closed 4 years ago
0
Version 1.0.3

#124 mortonjt closed 4 years ago
0
REL: Relax minimum TF version to 1.15 from 1.15.2

#123 fedarko closed 4 years ago
0
problem installing songbird 1.0.2 with qiime2-2020.2

#122 gwarmstrong closed 4 years ago
6
Stratified splitting to train/test in split_training

#121 pvanni closed 4 years ago
2