issues
search
biocore
/
songbird
Vanilla regression methods for microbiome differential abundance analysis
BSD 3-Clause "New" or "Revised" License
54
stars
25
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
ModuleNotFoundError: No module named 'tensorflow.contrib'
#120
ghost
closed
2 years ago
4
Interpretation of differentials
#119
dadahan
opened
4 years ago
7
(Temporarily) pin pandas version in the README's standalone install instructions
#118
fedarko
closed
4 years ago
2
Pandas versions should be pinned to be below v1
#117
fedarko
opened
4 years ago
3
DOC: add another resource link to README
#116
fedarko
closed
4 years ago
0
Updating version
#115
mortonjt
closed
4 years ago
0
REL: fix typo re: TF vsn + elaborate in changelog
#114
fedarko
closed
4 years ago
1
Getting Q-squared values for standalone Songbird?
#113
fedarko
opened
4 years ago
3
Examples and/or more precise information on "good enough" data re: model fitting
#112
fedarko
opened
4 years ago
2
More exact tests
#111
fedarko
opened
4 years ago
0
Upgrading to TensorFlow v2 or PyTorch
#110
fedarko
opened
4 years ago
2
Add to README; bump / pin TF versions; other minor fixes
#109
fedarko
closed
4 years ago
3
ENH: Q2 summary interval allow float
#108
gwarmstrong
closed
4 years ago
1
Travis tests failing all of a sudden
#107
gibsramen
closed
4 years ago
6
Suppression of warnings and (optionally) output
#106
gibsramen
closed
4 years ago
2
Suppress all output while running multinomial
#105
gibsramen
closed
4 years ago
3
Misaligned summary intervals cause different trajectory plots for identical models
#104
lisa55asil
closed
4 years ago
5
update README
#103
lisa55asil
closed
4 years ago
1
Make error message on invalid training column values more clear
#102
fedarko
opened
4 years ago
1
ENH: Set random seeds
#101
gwarmstrong
closed
4 years ago
10
songbird issue apparently involving FeatureTable [Frequency] column lengths
#100
TizianaS92
closed
4 years ago
2
Issue 55
#99
mortonjt
closed
4 years ago
3
Behavior of "minimum feature count" is incorrectly documented
#98
fedarko
closed
4 years ago
2
Accounting for phylogenetic relation between samples in the formula?
#97
Jigyasa3
opened
4 years ago
1
Installing standalone version of Songbird using pip
#96
Jigyasa3
closed
4 years ago
2
NEW: Add tensorboard hparams to CLI
#95
gwarmstrong
closed
4 years ago
4
Repeated lines in MultRegression __init__
#94
gwarmstrong
closed
4 years ago
0
Hyperparameter tunining with hparams in tensorboard
#93
gwarmstrong
closed
4 years ago
1
Q2 >1
#92
vianka16
closed
4 years ago
5
Adding --p-logging-dir option
#91
mortonjt
opened
4 years ago
1
Version 1 release
#90
mortonjt
closed
4 years ago
0
Handling duplicate metadata scenario
#89
mortonjt
closed
4 years ago
0
Cleaning up readme
#88
mortonjt
closed
4 years ago
3
Cleaning up q2 value
#87
mortonjt
closed
4 years ago
3
Addressing issue 85
#86
mortonjt
closed
4 years ago
1
Drop duplicates in metadata
#85
mortonjt
closed
4 years ago
0
add examples of how model fitting plots *should not* look?
#84
fedarko
opened
4 years ago
2
Add explanations for what exactly "Intercept" differentials mean
#83
fedarko
opened
4 years ago
4
Have better explanation for Q-squared values
#82
mortonjt
opened
4 years ago
0
More Patsy formula examples in README? / More documentation on design matrices, ANOVA, etc.
#81
fedarko
opened
4 years ago
3
Improved documentation and Q2 summary visualizations; centralizing parameters
#80
fedarko
closed
4 years ago
14
How is # iterations actually being calculated?
#79
fedarko
closed
4 years ago
2
Detect and ignore #q2:types rows in standalone metadata input
#78
fedarko
opened
4 years ago
1
Using a smaller default summary-interval
#77
fedarko
closed
4 years ago
0
summarize-single doesn't actually need a feature table as input
#76
fedarko
closed
4 years ago
3
Accounting for different summary intervals in summarize-paired?
#75
fedarko
opened
4 years ago
4
Unable to install songbird and Qiime together
#74
gibsramen
closed
4 years ago
7
Update README.md
#73
lisa55asil
closed
4 years ago
1
Improving QIIME 2 summary visualizations
#72
fedarko
closed
4 years ago
7
enabling logging again
#71
mortonjt
closed
4 years ago
2
Previous
Next