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biocore
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songbird
Vanilla regression methods for microbiome differential abundance analysis
BSD 3-Clause "New" or "Revised" License
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About SCFAs.
#170
orange-3711
opened
9 months ago
1
songbird multinomial error: negative dimensions are not allowed
#169
sherlyn99
closed
11 months ago
5
Error running the standalone version of songbird
#168
pyjm
closed
1 year ago
14
q2-songbird biplot metadata issue
#167
pablocatarecha
closed
1 year ago
4
Qiime Songbird Multinomial - 'Data Frame' Error
#166
nagr4657
closed
1 year ago
14
Is low values of Q2 fine to keep move forward for manuscript ?
#165
princy149
closed
1 year ago
2
collapsing at taxa level and then use in songbird pipeline is right way or not?
#164
princy149
closed
1 year ago
2
songbird qurro result export as ranking order csv format with log fold change values for groups
#163
princy149
closed
2 years ago
5
songbird installation with qiime2-2020.2 problem
#162
princy149
closed
1 year ago
4
Error message: UnboundLocalError: local variable 'i' referenced before assignment
#161
pig-raffles
closed
1 year ago
5
M1 12.2.1 Mackbook air problems with instalation of songbird
#160
cortegas
closed
1 year ago
1
X axis of the CV error plots or tensorboard plots
#159
manjumoorthy95
opened
2 years ago
4
Problems with installation
#158
pig-raffles
closed
2 years ago
8
Songbird Input format
#157
y3zhu
closed
1 year ago
2
REQUEST: any plan to package this for R?
#156
StfnRomano
closed
3 years ago
1
Can songbird be used in a Jupyter notebook without command line wrappers?
#155
jolespin
opened
3 years ago
11
README installation instructions don't seem to work
#154
wasade
opened
3 years ago
3
missing column in songbird output
#153
bck243
opened
3 years ago
0
Songbird tensorflow error
#152
JGADuBose
closed
2 years ago
6
songbird multinomial treating variables as categorical when they are numeric
#151
bck243
closed
3 years ago
7
Plugin error from songbird: 'Testing'
#150
bck243
closed
3 years ago
4
There was a problem importing redsea.biom: redsea.biom is not a(n) BIOMV210Format file
#149
bck243
closed
3 years ago
4
songbird 2?
#148
Alxdu
opened
3 years ago
3
Plugin error from songbird
#147
brunobohn7
closed
3 years ago
7
ValueError: initial_value must have a shape specified: Tensor("random_normal:0", shape=(2, ?), dtype=float32)
#146
BrettLoman
opened
3 years ago
1
About filtering the input biom file
#145
coralzhang
opened
3 years ago
5
qiime2-2020.8 and songbird-1.0.3 unsatisfiable
#144
AbhishakeL
closed
3 years ago
1
Songbird usage approach
#143
mTangherlini
closed
3 years ago
1
using a subset of samples
#142
coralzhang
closed
3 years ago
3
Memory errors for large datasets
#141
mortonjt
opened
3 years ago
4
Fix, test, and document filtering bug
#140
fedarko
closed
3 years ago
1
Off-by-one errors in filtering?
#139
fedarko
closed
3 years ago
0
patsy.PatsyError: Error evaluating factor: NameError: name 'X' is not defined
#138
johannesbjork
closed
4 years ago
3
ValueError: negative dimensions are not allowed
#137
mortonjt
closed
1 year ago
4
formatting full factorial formula
#136
sformel
closed
4 years ago
2
Multinomial regression continuous variable scaling
#135
ibrila
closed
3 years ago
3
Using songbird standalone
#134
coralzhang
opened
4 years ago
5
Error running songbird standalone
#133
swokybio
opened
4 years ago
7
IndexError: Issue importing data into songbird?
#132
bck243
closed
4 years ago
2
Statistical assumptions?
#131
shenjean
closed
3 years ago
2
log(a/b) - a and b values
#130
L-Boonstra
closed
4 years ago
2
confusing ID column names
#129
redbluewater
opened
4 years ago
1
TypeError: SparseDataFrame() takes no arguments
#128
sformel
opened
4 years ago
6
Replace conda-forge with pip in Q2 install instructions
#127
fedarko
closed
4 years ago
1
More QIIME 2 / TensorFlow conda-forge installation problems ._.
#126
fedarko
opened
4 years ago
6
Post release update
#125
mortonjt
closed
4 years ago
0
Version 1.0.3
#124
mortonjt
closed
4 years ago
0
REL: Relax minimum TF version to 1.15 from 1.15.2
#123
fedarko
closed
4 years ago
0
problem installing songbird 1.0.2 with qiime2-2020.2
#122
gwarmstrong
closed
4 years ago
6
Stratified splitting to train/test in split_training
#121
pvanni
closed
4 years ago
2
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