issues
search
biodavidjm
/
artMS
Analytical R Tools for Mass Spectrometry
GNU General Public License v3.0
14
stars
7
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Plots: Improve all plots printed labels when running too small or large datasets
#147
biodavidjm
closed
4 years ago
0
Make the output name for QC plots consistent
#146
biodavidjm
closed
4 years ago
0
Add symposium slides to vignette
#145
biodavidjm
closed
4 years ago
0
Implement acetylation analysis
#144
biodavidjm
closed
4 years ago
0
artmsQualityControlSummaryExtended() does not handle properly technical replicates
#143
biodavidjm
opened
4 years ago
0
Update documentation: Run & technical replicates
#142
biodavidjm
closed
4 years ago
0
Error in Protein ID overlap matrix from QC-ID-Overlap.pdf
#141
JoshEbner
closed
3 years ago
2
analysis of Quantification: add more options to remove outliers of abundance data: IQR, STD, keep
#140
biodavidjm
closed
4 years ago
0
Fix artms_checkRawFileColumnName affecting artmsQualityControlSummaryExtended()
#139
biodavidjm
closed
4 years ago
0
Update documentation
#138
biodavidjm
closed
4 years ago
0
Change default name for artmsAnalysisQuantifications
#137
biodavidjm
closed
4 years ago
0
Error in .artms_checkRawFileColumnName(x)
#136
gurpreet-bioinfo
closed
4 years ago
7
Error reported when converting the data to MSStats format
#135
weixiandeng
closed
4 years ago
3
issue of criteria of removing outliers
#134
alanazhouyuan
closed
4 years ago
1
Add QCplots and ConditionPlot
#133
biodavidjm
closed
3 years ago
0
Fixed an issue when impute fails due to missing outlier data
#132
bpolacco
closed
4 years ago
0
Add error if not all the RawFiles in keys file are found in the evidence file
#131
biodavidjm
closed
4 years ago
0
artmsProtein2SiteConversion error when processing UB data
#130
biodavidjm
closed
4 years ago
0
artmsProtein2SiteConversion: deal with full uniprot id and stop if it doesn't
#129
biodavidjm
closed
4 years ago
0
Update documentation
#128
biodavidjm
closed
4 years ago
0
Replace reshape2 by data.table
#127
biodavidjm
closed
4 years ago
0
Address Warning messages
#126
biodavidjm
closed
4 years ago
0
Add %ni% as part of the main function library
#125
biodavidjm
closed
5 years ago
0
artmsChangeColumnName add warning if "old" colname is not there
#124
biodavidjm
closed
4 years ago
0
Acetyalation analysis
#123
daniswan
closed
4 years ago
0
Analysis of quantifications imputation error
#122
daniswan
closed
4 years ago
0
Fix analysis of Quantifications: add tryCatches to deal with accessing gprofiler
#121
biodavidjm
closed
4 years ago
0
Require R > 3.6
#120
biodavidjm
closed
4 years ago
0
Move case studies away from createData to a new script
#119
biodavidjm
closed
4 years ago
0
Check that the columns are not all NULL
#118
biodavidjm
closed
4 years ago
0
Analysis of quantification error: "Aggregation function missing: defaulting to length"
#117
daniswan
closed
4 years ago
1
Add check point on "modified sequence"
#116
biodavidjm
closed
3 years ago
0
Prevent artmsWriteConfigYamlFile for overwriting existing config file
#115
biodavidjm
closed
3 years ago
0
define global varialbles within each function
#114
biodavidjm
closed
3 years ago
0
QC Plot MZ
#113
daniswan
opened
5 years ago
0
Vignette: Add details of how to run analysis of quantification on PTMSITES
#112
biodavidjm
closed
4 years ago
0
Remove outliers before boxplot of abundance values
#111
biodavidjm
closed
4 years ago
0
Silac type of analysis 'breaks' are not unique error
#110
algom
closed
5 years ago
6
QC basic evidence-based: add controls and plots for technical replicates
#109
biodavidjm
closed
4 years ago
0
Adjust the size of pdf generated by QC evidence extended function
#108
biodavidjm
closed
4 years ago
0
Add density plots
#107
biodavidjm
opened
5 years ago
0
Fix: add fix for PH in basic quality control function
#106
biodavidjm
closed
4 years ago
0
add new function to calculate error bars (for plots)
#105
biodavidjm
closed
4 years ago
0
Fraction of imputed values is zero in results.imputation.pdf
#104
daniswan
opened
5 years ago
3
artmsProtein2SiteConversion {artMS} error in everything
#103
daniswan
closed
4 years ago
1
QC: add missing values function
#102
biodavidjm
opened
5 years ago
0
Error running qc Summary based
#101
biodavidjm
closed
4 years ago
0
Error in x[["Version"]] : subscript out of bounds
#100
daniswan
closed
4 years ago
1
Add option to remove protein groups in evidence to saint and saintexpress
#99
biodavidjm
opened
5 years ago
0
artmsAnalysisQuantification: add check point if modified sites/peptides analysis for enrichment
#98
biodavidjm
closed
4 years ago
0
Previous
Next