bioinfologics sdg issues

bioinfologics / sdg

Sequence Distance Graph framework: graph + reads + mapping + analysis

MIT License

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issues

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K 128 from master

#150 gonzalogacc closed 2 years ago
0
Kcounter 128

#149 gonzalogacc closed 2 years ago
0
Gonza

#139 gonzalogacc closed 3 years ago
0
BUG FIX: correct distances for intra-node connections #2

#138 gonzalogacc closed 3 years ago
0
Gonza

#137 gonzalogacc closed 3 years ago
0
Update README.rst

#136 TransGirlCodes closed 3 years ago
1
redesign views

#135 bjclavijo opened 4 years ago
0
Add rle capability to long read datastores

#134 bjclavijo opened 4 years ago
0
Kci to take kmer counter index as argument or somethign similar

#133 gonzalogacc opened 4 years ago
0
Installation issue

#132 chrisquince closed 4 years ago
1
merge bj branch into master

#131 bjclavijo closed 4 years ago
0
Merge benjward/kmeriter

#130 TransGirlCodes closed 3 years ago
4
segfault when making a workspace including a long read datastore

#129 jonwright99 opened 4 years ago
0
Possible overflow in ws.ls()

#128 jonwright99 opened 4 years ago
1
stats_by_kci function copy form python

#127 gonzalogacc closed 4 years ago
0
Unify all kmer generation from strings/char* in a KmerIterator class template

#126 bjclavijo opened 4 years ago
0
GraphPatcher

#125 bjclavijo opened 4 years ago
0
sdg-dbg allows kmer size>63

#124 jonwright99 opened 4 years ago
0
all datastores to return RC sequence when using negative read ids

#123 bjclavijo opened 4 years ago
0
check seqID_T is used everywhere to refer to read ids

#122 bjclavijo opened 4 years ago
0
Populate distance in dg returned from make_paired10x_multilinkage

#121 bjclavijo closed 4 years ago
0
support multiple files on datastore make

#120 bjclavijo opened 4 years ago
0
Lr minimap

#119 bjclavijo closed 5 years ago
1
sdg-kmercounter status not working

#118 jonwright99 closed 5 years ago
0
Adding a datastore gives an .bsgws as output, not .sdgws

#117 jonwright99 closed 5 years ago
0
Fix an issue with cmake setting a git branch variable in code

#116 TransGirlCodes closed 5 years ago
0
Update how binaries are built

#115 TransGirlCodes closed 5 years ago
1
Name inconsistency kmer counts api

#114 gonzalogacc closed 5 years ago
0
selected_node parameter in write_to_gfa1 not accepting int vector

#113 gonzalogacc closed 5 years ago
1
Check that std::vector<std::string>> arguments to functions can be called with native vectors and native strings from python

#112 bjclavijo closed 5 years ago
1
Min read size parameter not working for long reads

#111 gonzalogacc closed 5 years ago
0
Add a list-contents and get_by_name functions to the ws

#110 gonzalogacc closed 5 years ago
3
Segfault on OSX

#109 TransGirlCodes closed 5 years ago
1
Make builds docs even when turned off

#108 TransGirlCodes closed 5 years ago
0
datastore vector realloc corrupts datastores

#107 bjclavijo closed 5 years ago
2
SDG.LinkedReadsDatastore_build_from_fastq never ends

#106 gonzalogacc closed 5 years ago
2
Linked reads DS data format

#105 gonzalogacc closed 5 years ago
1
Tidy read mapper's indexing and read mapping methods

#104 bjclavijo closed 5 years ago
2
Create a v1.0 release and pre-compiled binaries + lib

#103 bjclavijo opened 5 years ago
3
remove 7bp from r1 of 10x reads after the tag

#102 ljyanesm closed 5 years ago
0
Include circles when creating unitigs in the graph maker

#101 TransGirlCodes closed 5 years ago
2
Deprecate log for OperationJournals

#100 bjclavijo closed 5 years ago
0
Separate LinkageMaker and LinkageUntangler

#99 bjclavijo closed 5 years ago
1
Batch based kmer counter

#98 ljyanesm closed 5 years ago
0
Closes #95

#97 ljyanesm closed 5 years ago
0
Remove all unnecessary uses of 'this->', and rename arguments to functions that disambiguate with it.

#96 bjclavijo closed 5 years ago
1
Create an OperationJournal class to save support on the WS

#95 bjclavijo closed 5 years ago
0
Implemented ReadPathsDatastore:

#94 ljyanesm closed 5 years ago
0
LongReadsDatastore::get_read_sequence -> make it work like in all other datastores

#93 bjclavijo closed 5 years ago
0
Replace the individual Buffered getters in all code by ReadSequenceBuffer

#92 bjclavijo closed 5 years ago
0