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biolab
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orange3-single-cell
🍊🔬 Orange add-on for gene expression of single cell data
https://singlecell.biolab.si/
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[FIX] OWdotMatrix: handle ordering and several other bugs
#354
PrimozGodec
closed
5 years ago
5
Overhaul and modernize setup.py
#353
JakaKokosar
closed
5 years ago
0
[ENH] Preprocess: Add dropout-based gene selection
#352
VesnaT
closed
5 years ago
4
[FIX] Align Datasets: align checkboxes
#351
ajdapretnar
closed
5 years ago
1
OWscDataSets: fix import due to changes in bioinformatics
#350
JakaKokosar
closed
5 years ago
0
[ENH] owscorecells: output the data even if no gene markers are provided
#349
JakaKokosar
closed
5 years ago
1
Gene selection methods
#348
pavlin-policar
closed
4 years ago
0
[ENH] Set up CI with Azure Pipelines
#347
JakaKokosar
closed
5 years ago
1
[FIX] owfilter: Clear the scene in onDeleteWidget
#346
ales-erjavec
closed
5 years ago
1
[FIX] Fix tests
#345
JakaKokosar
closed
5 years ago
1
launcher: open link insted of example workflow on welcome page
#344
JakaKokosar
closed
5 years ago
0
Update template workflows
#343
mstrazar
closed
5 years ago
0
[FIX] Conda Installer: Restore compatibility with latest anaconda python
#342
ales-erjavec
closed
5 years ago
0
Single-cell preprocess tests fail
#341
JakaKokosar
closed
5 years ago
0
owmarkergenes: remove widget
#340
JakaKokosar
closed
5 years ago
0
Single-cell Preprocess: Add TF-IDF
#339
mstrazar
opened
5 years ago
1
[ENH] Cell type identification
#337
mstrazar
closed
5 years ago
2
Modify minimum allowed size for Load Data widget
#336
mstrazar
closed
5 years ago
0
[FIX] Loader: Consider series data type when guessing variables
#335
VesnaT
closed
5 years ago
0
[FIX] DotMatrix: Fix tooltips
#334
timpostuvan
closed
5 years ago
0
Speed-up Dataset Alignment
#333
mstrazar
opened
5 years ago
0
Loader: Use heuristics to guess data types for meta attributes
#332
VesnaT
closed
5 years ago
0
Load Data does not correctly recognise variable types
#331
mstrazar
closed
5 years ago
0
Score Cells: should output the data also when given no genes
#328
BlazZupan
closed
5 years ago
0
[FIX] ScoreCells: Do not output None
#327
VesnaT
closed
5 years ago
1
[FIX]OWScoreCells: properly handle new signals
#326
JakaKokosar
closed
5 years ago
1
scOrange 0.9 Mac package does not respect requirements.txt
#325
markotoplak
closed
5 years ago
1
[WIP][nomerge] Update workflows to match current Orange master
#324
mstrazar
closed
5 years ago
1
t-SNE widget in release does not work if installed as an add-on to Orange
#323
markotoplak
closed
5 years ago
4
Filter widget crashes when removed from canvas
#322
BlazZupan
closed
5 years ago
1
Louvain Clustering fails (random_state)
#321
mstrazar
closed
5 years ago
3
ExcelLoader: Speedup and enhancement
#320
VesnaT
closed
5 years ago
1
[FIX] OWDotMatrix: Fixed errors which occur when no discrete variables
#319
jurijsteblaj
closed
5 years ago
1
requirements: bump Orange3 and Orange3-bioinformatics version
#318
JakaKokosar
closed
5 years ago
1
[FIX] Score Cells: Do not output None if data exists
#317
VesnaT
closed
5 years ago
1
[ENH] OWDotMatrix: Added normalization
#316
jurijsteblaj
closed
5 years ago
1
Switch index url for Single Cell Datasets widget.
#315
acopar
closed
5 years ago
1
tSNE: Move to core
#314
VesnaT
closed
5 years ago
1
t-SNE: Switch to approximat NN search when have large number of samples
#313
pavlin-policar
closed
5 years ago
1
Convert .rst documentation to .md
#312
ajdapretnar
closed
5 years ago
2
[FIX] OWDotMatrix: Removing reports and report button
#311
jurijsteblaj
closed
5 years ago
1
OWScoreGenes: IndexError: index is out of bounds
#310
JakaKokosar
closed
5 years ago
1
OWDotMatrix: ValueError: 'None' is not in domain
#309
JakaKokosar
closed
5 years ago
1
OWDotMatrix: unhashable type: 'list'
#308
JakaKokosar
closed
5 years ago
3
OWLoadData: remember schema-specific paths to data sets
#307
mstrazar
opened
5 years ago
0
Update workflows for blog posts
#306
mstrazar
closed
5 years ago
3
[FIX] TestSelectMostVariableGene: fix failing test
#305
VesnaT
closed
5 years ago
0
[FIX] ContingencyTable: Fix for labels getting cut off in circle mode
#304
jurijsteblaj
closed
5 years ago
3
Dot Matrix: visualisation moves around under specific actions
#303
BlazZupan
closed
5 years ago
0
Dot Matrix: add normalize data option
#302
BlazZupan
closed
5 years ago
0
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