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biolink
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biolink-model-toolkit
A collection of useful python functions for looking up information and working with the Biolink Model
https://biolink.github.io/biolink-model-toolkit/
BSD 3-Clause "New" or "Revised" License
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bump biolink model version
#176
sierra-moxon
closed
3 weeks ago
1
Bump certifi from 2024.6.2 to 2024.7.4
#175
dependabot[bot]
closed
3 weeks ago
1
Fix get association for boundary conditions
#174
RichardBruskiewich
closed
2 months ago
2
Bump urllib3 from 2.1.0 to 2.2.2
#173
dependabot[bot]
closed
2 months ago
1
add biolink curie formatting to get_associations method, fixes #171
#172
sierra-moxon
closed
2 months ago
1
get_associations() returns an emtpy list
#171
hina-shah
closed
2 months ago
2
Bump requests from 2.31.0 to 2.32.0
#170
dependabot[bot]
closed
2 months ago
1
Added a couple of utility methods useful at my end but which seemed to belong in BMT
#169
RichardBruskiewich
closed
3 months ago
1
bump biolink model version
#168
sierra-moxon
closed
3 months ago
1
Bump jinja2 from 3.1.3 to 3.1.4
#167
dependabot[bot]
closed
3 months ago
1
update biolink to 4.2.0
#166
sierra-moxon
closed
4 months ago
1
Bump idna from 3.6 to 3.7
#165
dependabot[bot]
closed
4 months ago
1
Handle aliases in queries for get_descendants
#164
sierra-moxon
closed
4 months ago
1
get_descendants() errors when called with an alias
#163
brettasmi
closed
2 months ago
4
update biolink version to 4.1.5
#162
sierra-moxon
closed
5 months ago
1
updating biolink 4.1.4
#161
sierra-moxon
closed
5 months ago
1
Bump jinja2 from 3.1.2 to 3.1.3
#160
dependabot[bot]
closed
6 months ago
1
Biolink model 4.0 and permissible value descendants and children methods
#159
sierra-moxon
closed
8 months ago
1
fuss with workflows to include an add of kgx with the current bmt
#158
sierra-moxon
closed
8 months ago
1
Biolink model 3.6.0 update, and extra dependency resolution action
#157
sierra-moxon
closed
8 months ago
1
instantiate bmt on a scheduled action to test related dependencies
#156
sierra-moxon
closed
8 months ago
0
Latest Linkml on fresh install of bmt errors out.
#155
YaphetKG
closed
4 months ago
3
Error in get_descendents with curies
#154
cbizon
opened
9 months ago
1
Bump urllib3 from 2.0.2 to 2.0.7
#153
dependabot[bot]
closed
8 months ago
1
Bump urllib3 from 2.0.2 to 2.0.6
#152
dependabot[bot]
closed
10 months ago
2
Instructions for install
#151
oew1v07
opened
11 months ago
0
tweak-pr-148-per-suggestions
#150
RichardBruskiewich
closed
11 months ago
1
Parameterized LATEST_BIOLINK_RELEASE and updated to 3.5.4
#149
RichardBruskiewich
closed
11 months ago
1
get_associations repaired with added inverse matching
#148
RichardBruskiewich
closed
11 months ago
1
Possible bug in qualifier value range slot_usage access in some biolink:Association subclasses
#147
RichardBruskiewich
closed
1 year ago
2
Enhance S-P-O pattern matching to biolink:Association subclasses
#146
RichardBruskiewich
closed
2 months ago
1
Problems retrieving inverse predicates
#145
colleenXu
opened
1 year ago
2
update to biolink-model version 3.5.3
#144
sierra-moxon
closed
1 year ago
1
issue-139-enhance-qualifier-value-validation
#143
RichardBruskiewich
closed
1 year ago
2
Bump certifi from 2023.5.7 to 2023.7.22
#142
dependabot[bot]
closed
1 year ago
1
issue-140-get-associations
#141
RichardBruskiewich
closed
1 year ago
1
Need a toolkit method to return subclass(es) of biolink:Association, related to given subject and object categories plus a list of predicates
#140
RichardBruskiewich
closed
1 year ago
1
Enhance qualifier value validation.
#139
RichardBruskiewich
closed
1 year ago
1
update to biolink 3.5.0
#138
sierra-moxon
closed
1 year ago
1
small comment fix
#137
RichardBruskiewich
closed
1 year ago
1
Update toolkit.py
#136
RichardBruskiewich
closed
1 year ago
2
fix test; infores parameters no longer in biolink as slots
#135
sierra-moxon
closed
1 year ago
1
Remove oak dependency
#134
sierra-moxon
closed
1 year ago
1
Bump requests from 2.30.0 to 2.31.0
#133
dependabot[bot]
closed
1 year ago
1
Rustsim pinning
#132
sierra-moxon
closed
1 year ago
1
Bump pymdown-extensions from 9.11 to 10.0
#131
dependabot[bot]
closed
1 year ago
1
update oaklib
#130
sierra-moxon
closed
1 year ago
1
Toolkit fails to populate infores_map because of mismatching number of fields
#129
stimon
closed
1 year ago
3
Update infores file format parser
#128
sierra-moxon
closed
1 year ago
1
update to biolink-model v3.3.1
#127
sierra-moxon
closed
1 year ago
1
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