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biolink
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biolink-model-toolkit
A collection of useful python functions for looking up information and working with the Biolink Model
https://biolink.github.io/biolink-model-toolkit/
BSD 3-Clause "New" or "Revised" License
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Validate edge method for use in semmeddb domain/range constraint analysis
#125
sierra-moxon
closed
1 year ago
1
check bte meta knowledge graph for domain/range constraint violations
#124
sierra-moxon
closed
1 year ago
1
remove-duplicate-is_reachable_from_enum-call
#123
RichardBruskiewich
closed
1 year ago
2
Retrieve denormalized properties, fixes #121
#122
sierra-moxon
closed
1 year ago
1
create method to retrieve denormalized edge properties from biolink model
#121
sierra-moxon
closed
1 year ago
0
update to biolink-model 3.2.3
#120
sierra-moxon
closed
1 year ago
1
Update biolink 3.2.2
#119
sierra-moxon
closed
1 year ago
1
many dependencies should be dev dependencies
#118
cmungall
closed
1 year ago
2
add class and slot uris in get_element method, fixes #116
#117
sierra-moxon
closed
1 year ago
1
return class_uri with superclasses
#116
sierra-moxon
closed
1 year ago
0
exact, narrow, broad, close, related mappings collection fixes #111
#115
sierra-moxon
closed
1 year ago
1
update poetry.lock file to update bioregistry via oaklib, fixes #113
#114
sierra-moxon
closed
1 year ago
1
deployment of bmt on IRTB environments means pystow can't store cache files in default directory
#113
sierra-moxon
closed
1 year ago
1
Added tests for get_all_element_by_mapping()
#112
gaurav
closed
1 year ago
1
Unable to use get_all_element_by_mapping() to retrieve mappings for STY values
#111
gaurav
closed
1 year ago
1
HTTP Error 404
#110
andrewsu
closed
1 year ago
3
Bump markdown-it-py from 2.1.0 to 2.2.0
#109
dependabot[bot]
closed
1 year ago
2
Patch small bugs v1.0.0
#108
sierra-moxon
closed
1 year ago
1
patch-small-bugs-v1.0.0
#107
RichardBruskiewich
closed
1 year ago
1
Test type
#106
sierra-moxon
closed
1 year ago
1
Bump aiohttp from 2.3.10 to 3.7.4
#105
dependabot[bot]
closed
1 year ago
1
Qualifier enum support
#104
sierra-moxon
closed
1 year ago
1
replace pytest with unittest to align development with LinkML
#103
sierra-moxon
closed
10 months ago
0
add test for and fixes #93, fixes #86
#102
sierra-moxon
closed
1 year ago
1
provide methods to navigate enumeration hierarchies
#101
sierra-moxon
closed
1 year ago
1
Support predicate maps
#100
sierra-moxon
closed
1 year ago
1
enum hierarchy support, remove linkml dependency
#99
sierra-moxon
closed
1 year ago
1
Bump certifi from 2022.9.24 to 2022.12.7
#98
dependabot[bot]
closed
1 year ago
1
bmt version 0.9.0 causing compatibility issues with reasoner-validator
#97
CaseyTa
closed
11 months ago
2
push html files in gh-pages
#96
sierra-moxon
closed
1 year ago
1
Poetry
#95
sierra-moxon
closed
1 year ago
1
Poetry
#94
sierra-moxon
closed
1 year ago
1
BMT raises an exception when getting decendants of certain types
#93
YaphetKG
closed
1 year ago
0
install bmt in colab
#92
raven44099
closed
1 year ago
2
initialization time is too slow
#91
sierra-moxon
closed
1 year ago
3
Cannot find documentation any more
#90
slobentanzer
closed
1 year ago
3
add inverses notebook
#89
sierra-moxon
closed
1 year ago
1
Biolink latest version giving bmt errors
#88
YaphetKG
closed
1 year ago
4
Add test for get inverse
#87
sierra-moxon
closed
1 year ago
1
from kgx: find all multi-valued slots
#86
sierra-moxon
closed
1 year ago
0
create bmt methods to return infores catelog
#85
sierra-moxon
closed
1 year ago
1
Test if a given CURIE prefix (namespace) is known to Biolink Model (any of the prefixes, not just the category id_prefixes)
#84
RichardBruskiewich
closed
1 year ago
1
implement is_node_property() and is_association_slot()
#83
RichardBruskiewich
closed
1 year ago
1
Add a few utility membership predicate methods to BMT
#82
RichardBruskiewich
closed
1 year ago
0
fix up workflows to autodeploy to pypi
#81
sierra-moxon
closed
1 year ago
1
update biolink model to 3.0.0 fixes #78
#80
sierra-moxon
closed
1 year ago
1
fix tests with updated model
#79
sierra-moxon
closed
2 years ago
1
Some genealogy of classes not being returned
#78
YaphetKG
closed
1 year ago
2
fix tests to work with 2.2.16 bm release
#77
sierra-moxon
closed
2 years ago
1
Given a URI, can on get the CURIE (or vice versa?)
#76
RichardBruskiewich
closed
1 year ago
1
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