This repository contains the Biowdl workflow usable for processing RNA-seq data. This workflow will performs QC (including adapter clipping), mapping, variant-calling and expression quantification.
Documentation for this workflow can be found here.
This workflow is part of Biowdl developed by the SASC team at Leiden University Medical Center.
For any question related to RNA-seq, please use the github issue tracker or contact the SASC team directly at: sasc@lumc.nl.