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blackrim
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treePL
Phylogenetic penalized likelihood
https://github.com/blackrim/treePL/wiki
GNU General Public License v3.0
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Installation issues
#67
kldxgg
closed
5 months ago
1
Large variation among different replicates but with same parameters
#66
XuWeiEvo
opened
5 months ago
0
The root time is biased towards the maximum time of the fossil which calibrated to the root.
#65
XuWeiEvo
closed
1 month ago
3
Honor configure options better
#64
evanlinde
opened
6 months ago
0
Failed setting feasible start rates/dates after 10 attempts. Aborting.
#63
Puguang-Zhao
opened
6 months ago
8
Segmentation fault (core dumped) when using prime
#62
intactcircle
closed
1 year ago
0
How to call treePL ??
#61
Galaxy-228
opened
2 years ago
11
Is there a license?
#60
james-vincent
closed
1 year ago
1
R script to check consistency of calibrations for 100 large trees (~3,000 taxa)?
#59
Belinda333
opened
2 years ago
22
treePL not following age calibrations
#58
jbernst
closed
2 years ago
4
Installation problem
#57
francicco
opened
3 years ago
0
Treepl+RaxML replicate trees
#56
carolinaamg
closed
1 year ago
1
Problem with mrca and tiny branch length at internal node.
#55
BiodeB
closed
3 years ago
1
treepl: command not found
#54
BiodeB
closed
3 years ago
1
Confidence Intervals: Bayesian vs ML
#53
dylanHco
closed
3 years ago
0
Writing a for loop for treepl?
#52
dylanHco
closed
1 year ago
2
CV hanging
#51
tle003
opened
4 years ago
1
Unstable smooth values
#50
kjlmaurin
closed
3 years ago
0
What exactly does "linear search failed" mean in terms of tree quality?
#49
jamiethompson77
opened
4 years ago
4
segmentation fault
#48
EduardoFdzOrt
closed
4 years ago
2
Tree is invalid: missing concluding semicolon
#47
kjlmaurin
closed
4 years ago
7
How to run treePL?
#46
kjlmaurin
closed
4 years ago
3
use compiler specified with configure
#45
josephwb
closed
4 years ago
1
How to run the "wiggle" option mentioned in the paper?
#44
anhong11
closed
4 years ago
1
configure does not honour options specified
#43
josephwb
closed
4 years ago
5
Meaning of numsites
#42
coyotree
closed
4 years ago
2
announcement: docker treePL
#41
rvosa
closed
4 years ago
1
Calibration points missing node bars
#40
coyotree
closed
5 years ago
1
seqfaults on quoted names
#39
josephwb
closed
1 year ago
0
Is this project still being maintained?
#38
tseemann
closed
4 years ago
7
treePL not working properly
#37
gavrucent
closed
4 years ago
3
error in installation
#36
zhaonanhd
opened
6 years ago
0
Failed adolc compilation, ubuntu 16.04
#35
TristanLefebure
closed
4 years ago
2
calculating without gradient (might want to try a different optad=VALUE)
#34
stubbsrl
opened
6 years ago
1
Estimating substitution rates
#33
burbrink
opened
6 years ago
2
Prime: "Linear search failed" concerns
#32
coyotree
opened
6 years ago
0
How to reduce the number of constraints
#31
LuaBgd
closed
4 years ago
3
Node bars
#30
ghost
closed
7 years ago
10
Quick question : is there a linux version of TreePL ?
#29
LuaBgd
closed
7 years ago
3
Node ages
#28
ghost
closed
7 years ago
12
Run command
#27
ghost
closed
7 years ago
0
MRCA
#26
ghost
closed
7 years ago
12
stem vs crown
#25
stubbsrl
closed
7 years ago
1
Estimating error around dates?
#24
burbrink
closed
7 years ago
8
Configuration of adolc
#23
TomCarr
closed
7 years ago
1
how to choose the best smoothing from treePL
#22
ghost
closed
3 months ago
2
How drive treePL to estimate divergence time under strict global clock model?
#21
CalamusLiber
closed
3 months ago
4
Updated Mac install with homebrew
#20
jonchang
closed
6 years ago
22
adding CFLAGS, CPPFLAGS and LDFLAGS to Makefile
#19
hettling
closed
7 years ago
3
treePL with Mac OS 11.1
#18
Latastia
closed
8 years ago
8
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