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transrate-paper
Paper for transrate
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implement expression-balanced contig score in transrate
#21
blahah
opened
8 years ago
0
cite bamtools and bioruby in implementation details
#20
blahah
closed
9 years ago
0
many fixes
#19
cboursnell
closed
9 years ago
0
format for genome biology
#18
blahah
closed
9 years ago
0
random perturbation experiments
#17
blahah
closed
9 years ago
1
do parameter sweep with each assembler for each species
#16
blahah
closed
9 years ago
0
Criterion for minimal read evidence
#15
blahah
closed
9 years ago
0
Segmentation score assessment (post mtg 2014/11/18)
#14
blahah
closed
9 years ago
0
Score assessment changes post meeting on 2014/11/18
#13
blahah
closed
9 years ago
2
TSA and simulation
#12
cboursnell
closed
9 years ago
0
add all analysis stages and plotting into the main app
#11
blahah
closed
9 years ago
0
figure5: add panels with scores for simulated assemblies
#10
blahah
closed
9 years ago
1
segmentation: validate by simulation
#9
blahah
closed
9 years ago
0
figure5: explore plot options
#8
blahah
closed
9 years ago
1
figure 1: update to latest score
#7
blahah
closed
9 years ago
0
figure 1: long format
#6
blahah
closed
9 years ago
0
plot contigs plotted against reference transcriptomes vs score
#5
blahah
closed
9 years ago
0
test BLAST for aligning contigs to genome
#4
blahah
closed
10 years ago
0
Pipeline
#3
cboursnell
closed
10 years ago
0
Finalise transrate scores
#2
blahah
closed
10 years ago
0
evaluate TSA assemblies
#1
blahah
closed
9 years ago
1