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brainglobe
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BrainGlobe
General information, resources and dicussions for the BrainGlobe project.
https://brainglobe.info/
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Standardise text formatting of atlases
#83
adamltyson
opened
3 weeks ago
1
[Feature] scheduled GH actions to keep cache
#82
alessandrofelder
closed
2 months ago
2
Merge this repo with `brainglobe-meta`
#81
adamltyson
opened
2 months ago
4
Ideas for a BrainGlobe DataAPI
#77
adamltyson
opened
4 months ago
0
[Feature] Investigate links with BrainTrawler
#76
adamltyson
closed
3 weeks ago
3
[Feature] Update across repos to latest linting rules
#74
alessandrofelder
opened
7 months ago
0
[Feature] Update across repos to latest linting rules
#73
alessandrofelder
closed
7 months ago
1
Automatically Mock user data for local test runs thoughout brainglobe
#68
alessandrofelder
opened
9 months ago
0
Improving Software Sustainability of `brainglobe-utils`
#67
willGraham01
closed
2 months ago
2
[Feature] Ensure all packages have a manifest and a manifest-checker
#65
alessandrofelder
closed
9 months ago
1
[BUG] Circular dependency between `imio` and `brainglobe-utils`
#64
willGraham01
closed
9 months ago
1
[Feature] Run CI on ARM runners too
#63
alessandrofelder
closed
5 months ago
2
Ongoing collaboration with AFNI developers on brain atlases
#62
niksirbi
opened
10 months ago
1
[Feature] Update cellfinder to brainmapper metaissue
#59
adamltyson
closed
10 months ago
3
tidy `napari` classifiers
#57
alessandrofelder
closed
11 months ago
3
Ensure all napari hub descriptions are complete and up to date
#55
adamltyson
opened
11 months ago
0
Future plan for `cellfinder-visualize`
#54
adamltyson
closed
11 months ago
3
Consistent packaging of napari backends in optional dependencies
#53
alessandrofelder
opened
12 months ago
4
Investigate integration with `navis`
#52
adamltyson
opened
12 months ago
0
Clarify purpose of this repo
#50
alessandrofelder
closed
12 months ago
1
Add guide/tooling to provide citation/methods for workflows
#49
adamltyson
opened
1 year ago
0
Investigate organisation-level pre-commit
#48
adamltyson
opened
1 year ago
1
Document high-level architecture of the BG project
#47
adamltyson
closed
9 months ago
4
[Feature] BG-V1: `cellfinder-core` and `napari` merge
#46
willGraham01
closed
10 months ago
1
[Feature] `cellfinder` migration to `workflows` for BG-v1
#45
willGraham01
closed
11 months ago
3
Merge bg-atlasapi and bg-atlasgen
#43
adamltyson
closed
9 months ago
7
How to handle dev tools for optional napari dependency
#42
niksirbi
closed
1 year ago
1
Develop metaplugin
#40
adamltyson
opened
1 year ago
0
[BGV1] Updates to documentation in in light of `brainreg` updates
#39
willGraham01
closed
1 year ago
0
[BGV1] Updates to `brainreg`
#38
willGraham01
closed
1 year ago
0
[BGV1] Updates to `brainreg-napari`
#37
willGraham01
closed
1 year ago
0
[BGV1] Updates to `brainreg-segment`
#36
willGraham01
closed
1 year ago
14
[Feature] BrainGlobe v1 Plan
#33
willGraham01
closed
10 months ago
12
Use fixture to test for leaky Qt Widgets
#69
alessandrofelder
opened
1 year ago
1
Add tests for napari plugins against the latest napari prerelease
#28
adamltyson
opened
1 year ago
1
[Feature] Tensorflow will be an optional dependency due to conda-forge issues
#27
willGraham01
closed
1 year ago
11
Combine all hidden directories in the users home?
#26
adamltyson
opened
1 year ago
1
Catalogue sample & test data
#25
adamltyson
opened
1 year ago
1
Create `pytest-brainglobe` plugin
#24
adamltyson
opened
1 year ago
1
Create `bg-utils` package
#23
adamltyson
closed
1 year ago
2
A suite of benchmarking tests for BrainGlobe
#21
alessandrofelder
opened
1 year ago
6
Simplifying the BrainGlobe (meta-)package structure for users and developers
#20
alessandrofelder
closed
1 year ago
3
make BG tools interoperable with Brainways
#19
alessandrofelder
closed
1 year ago
0
decide on and document how errors should be handled in core code and in GUIs
#16
alessandrofelder
opened
1 year ago
1
Define how contributions are credited
#15
adamltyson
closed
1 year ago
1
Decide on release patterns/cadences
#12
adamltyson
closed
1 year ago
1
BrainGlobe tutorials for neuroscientists
#11
alessandrofelder
closed
1 year ago
1
Add "Layer interpreters" as independent functionality and use them in BrainGlobe
#10
alessandrofelder
opened
1 year ago
3
`check-manifest` to move to `pre-commit`
#9
alessandrofelder
opened
1 year ago
0
Check that gitpython is only in brainreg and cellfinder
#8
dstansby
closed
1 year ago
0
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