brainglobe BrainGlobe issues

brainglobe / BrainGlobe

General information, resources and dicussions for the BrainGlobe project.

https://brainglobe.info/

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issues

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[Feature] Investigate links with BrainTrawler

#76 adamltyson opened 2 hours ago
0
[Feature] Update across repos to latest linting rules

#74 alessandrofelder opened 2 months ago
0
[Feature] Update across repos to latest linting rules

#73 alessandrofelder closed 2 months ago
1
Automatically Mock user data for local test runs thoughout brainglobe

#68 alessandrofelder opened 4 months ago
0
Improving Software Sustainability of `brainglobe-utils`

#67 willGraham01 opened 4 months ago
1
[Feature] Ensure all packages have a manifest and a manifest-checker

#65 alessandrofelder closed 4 months ago
1
[BUG] Circular dependency between `imio` and `brainglobe-utils`

#64 willGraham01 closed 4 months ago
1
[Feature] Run CI on ARM runners too

#63 alessandrofelder closed 3 weeks ago
2
Ongoing collaboration with AFNI developers on brain atlases

#62 niksirbi opened 5 months ago
1
[Feature] Update cellfinder to brainmapper metaissue

#59 adamltyson closed 5 months ago
3
tidy `napari` classifiers

#57 alessandrofelder closed 6 months ago
3
Ensure all napari hub descriptions are complete and up to date

#55 adamltyson opened 7 months ago
0
Future plan for `cellfinder-visualize`

#54 adamltyson closed 6 months ago
3
Consistent packaging of napari backends in optional dependencies

#53 alessandrofelder opened 7 months ago
4
Investigate integration with `navis`

#52 adamltyson opened 7 months ago
0
Clarify purpose of this repo

#50 alessandrofelder closed 7 months ago
1
Add guide/tooling to provide citation/methods for workflows

#49 adamltyson opened 7 months ago
0
Investigate organisation-level pre-commit

#48 adamltyson opened 7 months ago
1
Document high-level architecture of the BG project

#47 adamltyson closed 4 months ago
4
[Feature] BG-V1: `cellfinder-core` and `napari` merge

#46 willGraham01 closed 5 months ago
1
[Feature] `cellfinder` migration to `workflows` for BG-v1

#45 willGraham01 closed 6 months ago
3
Merge bg-atlasapi and bg-atlasgen

#43 adamltyson closed 4 months ago
7
How to handle dev tools for optional napari dependency

#42 niksirbi closed 7 months ago
1
Develop metaplugin

#40 adamltyson opened 8 months ago
0
[BGV1] Updates to documentation in in light of `brainreg` updates

#39 willGraham01 closed 7 months ago
0
[BGV1] Updates to `brainreg`

#38 willGraham01 closed 7 months ago
0
[BGV1] Updates to `brainreg-napari`

#37 willGraham01 closed 7 months ago
0
[BGV1] Updates to `brainreg-segment`

#36 willGraham01 closed 7 months ago
14
[Feature] BrainGlobe v1 Plan

#33 willGraham01 closed 5 months ago
12
Use fixture to test for leaky Qt Widgets

#69 alessandrofelder opened 10 months ago
1
Add tests for napari plugins against the latest napari prerelease

#28 adamltyson opened 1 year ago
1
[Feature] Tensorflow will be an optional dependency due to conda-forge issues

#27 willGraham01 closed 7 months ago
11
Combine all hidden directories in the users home?

#26 adamltyson opened 1 year ago
1
Catalogue sample & test data

#25 adamltyson opened 1 year ago
1
Create `pytest-brainglobe` plugin

#24 adamltyson opened 1 year ago
1
Create `bg-utils` package

#23 adamltyson closed 1 year ago
2
A suite of benchmarking tests for BrainGlobe

#21 alessandrofelder opened 1 year ago
6
Simplifying the BrainGlobe (meta-)package structure for users and developers

#20 alessandrofelder closed 7 months ago
3
make BG tools interoperable with Brainways

#19 alessandrofelder closed 7 months ago
0
decide on and document how errors should be handled in core code and in GUIs

#16 alessandrofelder opened 1 year ago
1
Define how contributions are credited

#15 adamltyson closed 8 months ago
1
Decide on release patterns/cadences

#12 adamltyson closed 7 months ago
1
BrainGlobe tutorials for neuroscientists

#11 alessandrofelder closed 8 months ago
1
Add "Layer interpreters" as independent functionality and use them in BrainGlobe

#10 alessandrofelder opened 1 year ago
3
`check-manifest` to move to `pre-commit`

#9 alessandrofelder opened 1 year ago
0
Check that gitpython is only in brainreg and cellfinder

#8 dstansby closed 7 months ago
0
Package test scripts

#7 dstansby opened 1 year ago
0
archive `cellfinder` (the CLI tool) and rename cellfinder-core to cellfinder

#6 alessandrofelder closed 7 months ago
1
Remove all test data from repositories

#5 dstansby opened 1 year ago
2
Merge `brainreg-napari` into `brainreg`

#4 alessandrofelder closed 7 months ago
1