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brainglobe
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brainrender
a python based software for visualization of neuroanatomical and morphological data.
https://brainglobe.info/documentation/brainrender/index.html
BSD 3-Clause "New" or "Revised" License
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URL out-of-date in user_volume_example
#242
alessandrofelder
closed
1 year ago
1
Can't install on Silicon Mac
#241
alessandrofelder
closed
1 year ago
1
BUG brainrender scene fails to display (apart from inset)
#240
alessandrofelder
closed
11 months ago
5
[pre-commit.ci] pre-commit autoupdate
#239
pre-commit-ci[bot]
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#238
pre-commit-ci[bot]
closed
1 year ago
0
BUG: Cannot install brainrender using pip
#237
shunnnli
closed
11 months ago
1
Update dependencies
#235
adamltyson
closed
1 year ago
9
Rendering with labels not working
#234
aboharbf
closed
10 months ago
3
[pre-commit.ci] pre-commit autoupdate
#233
pre-commit-ci[bot]
closed
1 year ago
0
Update links in readme
#232
adamltyson
closed
1 year ago
1
brainrender-gui : HD5F library version mismatch. 1.12.x != 1.10.6.
#231
taningh86
closed
1 year ago
3
Hi. Just starting to use brainrender. I was using cocoframer before this. I am in Python version 3.9. I see that it requires Python version < 3.8. Does that mean it strictly won't work with 3.9 and should I downgrade my Jupyter notebook to Python 3.8? Thanks!
#230
taningh86
closed
1 year ago
2
brainrender-gui does not display anything and throws errors in the console
#229
anandsku
closed
10 months ago
4
[BUG] Points flickering between assigned color and black when recording video through Animation class regardless of frame rate
#236
kgruver
closed
10 months ago
1
ValueError: allen_mouse_25um is not a valid atlas name! Exception ignored in: <function Scene.__del__ at 0x000002889456ED30>
#228
saulgoodenough
closed
1 year ago
1
Points actor to take rgb values
#227
takacsflora
closed
1 year ago
1
AttributeError: module 'numpy' has no attribute 'float' on Scene.render() with numpy 1.24
#226
johnmbarrett
closed
1 year ago
1
Trouble plotting cells with multiple colors
#225
mkunst23
closed
10 months ago
1
BUG Brainrender still produces pop-up window when trying to run embedded in a notebook with itkwidgets.
#224
rcpeene
closed
10 months ago
1
Changed 'lexer_name' param to 'lexer' for rich update
#223
rcpeene
closed
1 year ago
1
Multiscene rendering not working
#222
alexcalzoni
closed
1 year ago
1
Progressive Slicing Animation
#221
Bodhi-Rubinstein
closed
1 year ago
1
Cannot connect and download atlas in certain country
#220
Tywang-720
closed
2 years ago
2
BUG TypeError: __init__() got an unexpected keyword argument 'lexer_name'.
#219
rcpeene
closed
1 year ago
5
If I have all the location data array(ccf3 x,y,z) for one brain, how can i only plot one brain region in python? Can anyone share some scripts?
#218
Lynnsunny
closed
1 year ago
11
PointsDensity gets rendered outside of brain
#217
alexcalzoni
closed
1 year ago
6
Exporting rendering results
#216
YuNangoChen
closed
2 years ago
1
root mesh of atlas not visualised
#215
chrytsi
closed
1 year ago
12
Request for Addition of Specific Layer Information
#214
sjhkim1
closed
1 year ago
1
BUG
#213
daniel-manrique
closed
1 year ago
1
Add link to contributing guide
#212
adamltyson
closed
2 years ago
0
invert parameter missing
#211
RobertoDF
closed
2 years ago
1
kim_mouse atlas plots only one hemisphere
#210
alowet
closed
11 months ago
10
Create CODE_OF_CONDUCT.md
#209
adamltyson
closed
2 years ago
5
brainrender install problem: no module named 'brainrender'
#208
AmaranthCao
closed
2 years ago
5
fixed vedo compatibility issue BUG #206
#207
zhangxiaoxing
closed
2 years ago
1
BUG module 'vedo.settings' has no attribute 'notebookBackend' while import examples
#206
zhangxiaoxing
closed
2 years ago
1
Installation issues on x86_64 Ubuntu 20.04.4
#205
grahamfindlay
closed
2 years ago
8
Sagittal slicing bug
#204
RobertoDF
closed
2 years ago
14
key error in jupyter notebook using brainrender
#203
Thimotek
closed
2 years ago
1
Video or animation not saving
#202
mtantirigama
closed
2 years ago
2
Add invert param to slice method of Scene
#201
RobertoDF
closed
2 years ago
1
Segmentation fault on example
#200
AntonioST
closed
11 months ago
5
Screenshot transparent background not enabled
#199
horsto
closed
2 years ago
1
Colors differ in between scene rendering and video output
#198
horsto
closed
2 years ago
1
brainrender-gui KeyError: 'notebookBackend'
#197
jjtukker
closed
2 years ago
7
Adding Mirrored Mesh as Actor Causes everything to disapear
#196
gavinkress
closed
2 years ago
4
Vtk9
#195
FedeClaudi
closed
2 years ago
0
Points density
#194
FedeClaudi
closed
2 years ago
0
vtk9 branch error for the GUI
#193
HernandoMV
closed
2 years ago
4
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