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brainglobe
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cellfinder-core
Standalone cellfinder cell detection algorithm
https://brainglobe.info/documentation/cellfinder/index.html
BSD 3-Clause "New" or "Revised" License
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Fix typo in error message
#164
adamltyson
closed
1 year ago
1
Deprecation warnings are raised in numba 0.59
#163
adamltyson
closed
1 year ago
0
Add numpy to typing deps
#162
dstansby
closed
1 year ago
0
Force typing in detect sub-module
#161
dstansby
closed
1 year ago
0
More translation to `numba` needed in cell splitting code?
#159
alessandrofelder
closed
1 year ago
0
`split_cells` expects `Sequence[Point]` but receives `ndarray`, causes error
#158
adamltyson
closed
1 year ago
6
Move any high-level docs from this repo to the central BG dev docs.
#157
alessandrofelder
closed
1 year ago
1
Update README.md
#156
adamltyson
closed
1 year ago
0
Remove cibuildwheel and build pure-Python wheel
#155
dstansby
closed
1 year ago
0
Don't cast planes to uint64 in structure detection
#154
dstansby
closed
1 year ago
0
Clip planes in-place
#153
dstansby
closed
1 year ago
0
Use bool dtype for good tiles mask
#152
dstansby
closed
1 year ago
0
Add high level overview of cell detection stages
#151
dstansby
closed
1 year ago
5
Reduce memory usage
#150
dstansby
closed
1 year ago
1
Add typing to structure splitting code
#147
dstansby
closed
1 year ago
0
Only check unique neighbour IDs
#146
dstansby
closed
1 year ago
1
Numba error running on large datasets
#145
adamltyson
closed
1 year ago
1
Remove cibuildwheel
#144
adamltyson
closed
1 year ago
0
Start a changelog for next version
#143
dstansby
closed
1 year ago
0
Use "plane" instead of "layer" in detection
#142
dstansby
closed
1 year ago
0
Add testing on macOS arm
#141
dstansby
closed
1 year ago
0
Limit number of 2D filtering outputs stored in memory
#139
dstansby
closed
1 year ago
1
Add docs to structure detection
#138
dstansby
closed
1 year ago
0
Clean structure detection
#137
dstansby
closed
1 year ago
0
Standardise on one of "plane" or "layer"
#136
dstansby
closed
1 year ago
1
Add some docs on how bright points are marked
#135
dstansby
closed
1 year ago
0
Type ball filter
#133
dstansby
closed
1 year ago
0
Remove some un-used code
#132
dstansby
closed
1 year ago
0
Test for error when data dimensionality is wrong
#131
dstansby
closed
1 year ago
0
[Feature] Add a high level explantion of the steps involved in cell detection
#129
dstansby
closed
1 year ago
0
[Feature] Cast good tiles mask as `bool` instead of `uint8`
#128
dstansby
closed
1 year ago
0
Codecov not uploading coverage on main branch
#127
dstansby
closed
1 year ago
2
Remove manifest file
#126
dstansby
closed
1 year ago
0
Remove manifest file
#125
dstansby
closed
1 year ago
2
Collect coverage of numba decorated code
#124
dstansby
closed
1 year ago
3
Clean up structure_centre_wrapper
#123
dstansby
closed
1 year ago
1
Remove connect_eight()
#122
dstansby
closed
1 year ago
1
Merge benchmarking and numba work into main
#121
dstansby
closed
1 year ago
0
docs for `structure_detection.py`
#120
alessandrofelder
closed
1 year ago
1
Convert `multiprocessing` steps to `dask`
#118
dstansby
closed
1 year ago
3
Fix test coverage data collection
#117
dstansby
closed
1 year ago
0
Clean and document ball filter
#115
dstansby
closed
1 year ago
2
Clean and document 2D filter
#114
dstansby
closed
1 year ago
2
Convert CellDetector to numba
#112
dstansby
closed
1 year ago
1
Decide whether to keep `connect_eight()` structure linking
#111
dstansby
closed
1 year ago
2
[Feature]: Measure code coverage of previously Cythonized code
#110
dstansby
closed
1 year ago
1
Move test code in `structure_detection` to actual tests
#109
alessandrofelder
closed
1 year ago
0
`Ballfilter` docs
#108
alessandrofelder
closed
1 year ago
1
Turn off codecov commenting
#107
dstansby
closed
1 year ago
0
Misc classification typing
#106
dstansby
closed
1 year ago
1
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